Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi469g00013 ATGGAAGAGGTGTCTTCTTCTTCTATTGCTGCAACTACCATCGCTTCGTTATCATCCGCATCCTCTGCGATTGGTTTATCTTCTGCTGCTACAATTGCTGTGAATTCTTTTGCGTTTGGCTCGGCGTTTGGAGCTCTTGCTCCATCCTCTGCGTTGCTCTCTGCCTCACTCCAACCAGAAATTTCTCCTTCTTCTGTTTCTTTTCCGTTCACGGATTTGTTCTTTGGTACTGATATCTGCAAAGGCTCCACAACAAAACTGGAATGGAATCCATCACCAGAACCTTTCCACTTTGGAAGCTTTGGTTCTCTGGATCTTCACTGCGAAGAGGAGGACGAGGACACTGGAATAGTTCAAGTCACTCTGATCATCAGACTTGAAGAGGTCACTCTCTCCACTGGCGAAGAGGATGACGAACCTACTCTCGACCTCAAAACGAAACTGCACCGTTTTGACAAGGACGAAAACCATTGGAAGGAGCAAAGAGTTGGCACCTCTTACATGCAATCTCTGAGTAATGTGATTGTTGGTAATTATATTGCATGGCAACTGTTTGATGAAATGGCTGTTAGAGATATTATGTCTTGGAGCTCTACAACCACTGCATACTTTTTTGTGGCTTGTCTGTATAATGTTGGTCTCCTTGAGAATTTGAGTGTGGAAGATTGGCGGTGGTGGTGGAAGGCTTTGTTTACTTCAGGTTCTGCTGCTCTTTATGTTATCTTGTACTCCATTACTGATGTTATGATTGCTGGGAAGGTTGTTGTTGTGTATGGATATGGAGATGTTAGCAAGGGTTGTTTTGCTGTCTTGAAGCAAGCTACTGCTCGTGTGATCGTGGATTGCATGAGGCTTGCTATCAAATTGCTGATTTCTGGGGAAAAGAAAATCTGTGATCAAGTATTTGATTGTGTTGATTCCTTGAGAACTCAATGTTTTGCTGAAATCACTGCTAGCAGTGTGTCTATGCTTCTTAGTTTTGGAAAGGCTGTTGCCAAAAGAAAGAGGTCACCTGAAAAATTATTTGTTCTTCTAGACATGTATGAGAGAGAACTTCAGCCAAGGATAGAAAGACTGTTTGAAAGTAAAGCTTGCACTGAAATGCGGGAAGTTGATTTCAAGTTGATTGGGGAAGCCAATAGGATGTTGAGTGACCAAGCAAATCGATCCTTGTATGACATCAAGCTTAAAGGCTTTGTGAGAACTGCGGCACCTAAGACCTCATCCACTCACTCAAATGCAATTTTAAATTTTAAGGACAGTTTAAATGAATGGGACAGTATGGTTGGTGATGGTGACTGTGGATCAACTATGTATAACGGTGCAAAGGTAATTCTTGAGGACGTCAAAAATTACCCTTTGAATGATGCTGCAGAAACTTGTTTTCAGTGCTTGCAGCAGCCTTCTGGAACCATCATATGGAAGGCAAATACATGGATTGTGTGGTAA 1449 0.4231 MEEVSSSSIAATTIASLSSASSAIGLSSAATIAVNSFAFGSAFGALAPSSALLSASLQPEISPSSVSFPFTDLFFGTDICKGSTTKLEWNPSPEPFHFGSFGSLDLHCEEEDEDTGIVQVTLIIRLEEVTLSTGEEDDEPTLDLKTKLHRFDKDENHWKEQRVGTSYMQSLSNVIVGNYIAWQLFDEMAVRDIMSWSSTTTAYFFVACLYNVGLLENLSVEDWRWWWKALFTSGSAALYVILYSITDVMIAGKVVVVYGYGDVSKGCFAVLKQATARVIVDCMRLAIKLLISGEKKICDQVFDCVDSLRTQCFAEITASSVSMLLSFGKAVAKRKRSPEKLFVLLDMYERELQPRIERLFESKACTEMREVDFKLIGEANRMLSDQANRSLYDIKLKGFVRTAAPKTSSTHSNAILNFKDSLNEWDSMVGDGDCGSTMYNGAKVILEDVKNYPLNDAAETCFQCLQQPSGTIIWKANTWIVW 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi469g00013 482 Pfam Exo70 exocyst complex subunit 283 370 IPR046364 GO:0000145|GO:0005546|GO:0006887
Sebi469g00013 482 Pfam S-adenosyl-L-homocysteine hydrolase, NAD binding domain 244 281 IPR015878 -
Sebi469g00013 482 SUPERFAMILY DhaL-like 411 463 IPR036117 GO:0004371|GO:0006071
Sebi469g00013 482 PANTHER EXOCYST COMPLEX PROTEIN EXO70 177 388 IPR004140 GO:0000145|GO:0006887
Sebi469g00013 482 Gene3D Exocyst complex component Exo70 260 404 - -
Sebi469g00013 482 Gene3D - 74 171 IPR011993 -
Sebi469g00013 482 ProSiteProfiles Ran binding domain type 1 profile. 119 164 IPR000156 GO:0046907
Sebi469g00013 482 SUPERFAMILY PH domain-like 123 167 - -
Sebi469g00013 482 ProSiteProfiles DhaL domain profile. 402 482 IPR004007 GO:0004371|GO:0006071
Sebi469g00013 482 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 244 281 IPR036291 -
Sebi469g00013 482 Gene3D - 405 467 IPR036117 GO:0004371|GO:0006071
Sebi469g00013 482 SUPERFAMILY Cullin repeat-like 283 390 IPR016159 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi469g00013 Sebi-Chr469 519767 522070 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi469g00013 280 370 EXO70 exocyst subunit family AT5G52340 66.667 1.80e-33 132
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi469g00013 K07195 - gmx:100779774 150.214