Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi469g00004 ATGGGAAAAGGAAGAGCACCATGCTGTGATAAGACTCAAGTGAAGAGAGGCCCTTGGAGCCCTCAAGAGGACCTTACACTCATAGCTTTCATCCAGAAACATGGCCATGAAAACTGGCGTGCTCTCCCCAAACAAGCAGGGCTTCTTCGATGTGGGAAAAGTTGTCGTTTGAGATGGATCAATTATCTCAGGCCTGATGTAAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAGGCTACATAAGGCCTTAGGGAACAAGTGGTCAAAGATTGCATCCCTTTTGCCTGGTAGGACTGACAATGAGATCAAGAATGTGTGGAACACACACTTAAAGAAAAGATTGGCTGTGAAAAATTCAGAGTCAAGTGCTGATGAATCCAAGCTGGAATCATCAATAACTTCCTCTTCTTCATCTTCATCTGAATCATTTGTATCAAATGAGGGACCAAATCTAGCAGAGACTACTCCTGGTAATGAATGTAATGAGCAAGCTTCCCAAGTGACAATGACAGATAAAATTGAGGAAGATTCAGAAAAACAAGTATCCAATGAACTTATTGGCATCACTGAGGATCTAAAAGAATCATCAACTTCATTATGTTCTGTTGAGTCAAATATCTTAAACTCAAGCCAGATTGTTGTCTACAAACCAGAACAACAACAATTGGCTTCTCCATTAACCTATCTAGGACCTTATGATGTTGACAATACATTAGAAGAGGTGGATAAACCAAACCATCTGGTTGAAATACCATGGGAATCAGATTATGATTTTTGGAAGTTGTTAGATAACATTGAATCTTTTCAATCAAATGAAGTCCAATTAGGGGAGTTCCCAGCCAGTCAAAGCTATAATTTTGGAGAAGAGAGTGTTCAAGATGCTGATGCAAGGAAATGGTCCCATGACTTTGAGAATGAGTTTGGAGTAGGTGAAACAAAGGAGTCAAAGAATTCTGCAGTTGAGCCAGAAATAGACCCTCAAACATTTTATTTCAATGATATGACAAGGCCAGAATCTGAATTAGACTTGGGTTATATTCAATTATGGCCCTCTTGGCCTCAAAACACTAGTATTTAA 1089 0.3939 MGKGRAPCCDKTQVKRGPWSPQEDLTLIAFIQKHGHENWRALPKQAGLLRCGKSCRLRWINYLRPDVKRGNFTAEEEETIIRLHKALGNKWSKIASLLPGRTDNEIKNVWNTHLKKRLAVKNSESSADESKLESSITSSSSSSSESFVSNEGPNLAETTPGNECNEQASQVTMTDKIEEDSEKQVSNELIGITEDLKESSTSLCSVESNILNSSQIVVYKPEQQQLASPLTYLGPYDVDNTLEEVDKPNHLVEIPWESDYDFWKLLDNIESFQSNEVQLGEFPASQSYNFGEESVQDADARKWSHDFENEFGVGETKESKNSAVEPEIDPQTFYFNDMTRPESELDLGYIQLWPSWPQNTSI 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi469g00004 362 MobiDBLite consensus disorder prediction 129 172 - -
Sebi469g00004 362 MobiDBLite consensus disorder prediction 120 182 - -
Sebi469g00004 362 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Sebi469g00004 362 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Sebi469g00004 362 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Sebi469g00004 362 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Sebi469g00004 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Sebi469g00004 362 FunFam Transcription factor RAX3 9 69 - -
Sebi469g00004 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Sebi469g00004 362 CDD SANT 71 114 IPR001005 -
Sebi469g00004 362 FunFam MYB transcription factor 70 145 - -
Sebi469g00004 362 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Sebi469g00004 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 4 208 - -
Sebi469g00004 362 CDD SANT 18 63 IPR001005 -
Sebi469g00004 362 Gene3D - 71 142 - -
Sebi469g00004 362 Gene3D - 16 68 - -
Sebi469g00004 362 SMART sant 15 65 IPR001005 -
Sebi469g00004 362 SMART sant 68 116 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi469g00004 Sebi-Chr469 76134 78557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi469g00004 1 315 MYB Transcription Factor Family AT1G79180 43.966 2.24e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi469g00004 Myb_DNA-binding 8.7e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi469g00004 K09422 - gmx:100101836 539.265