Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi468g00051 ATGGGTAAAGCACCCTGTTGTGACAAACATGGAGTCAGAAGGGGAGCTTGGACTCCTGAAGAAGATGAAGCCTTAGTTGAGTACATCAAGAAACATGGCCATGGAAGCTGGCGTTCACTCCCCAAACATGCAGTTTACAATTTTTTTAAGGGTTTAGATATTGAAAACTCTGAGTTTGCTCTTGAAGAAATTCCAATCACAATGTGCTGA 210 0.419 MGKAPCCDKHGVRRGAWTPEEDEALVEYIKKHGHGSWRSLPKHAVYNFFKGLDIENSEFALEEIPITMC 69
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi468g00051 69 SUPERFAMILY Homeodomain-like 8 44 IPR009057 -
Sebi468g00051 69 SMART sant 13 55 IPR001005 -
Sebi468g00051 69 Gene3D - 7 53 - -
Sebi468g00051 69 CDD SANT 16 43 IPR001005 -
Sebi468g00051 69 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 43 IPR017930 -
Sebi468g00051 69 Pfam Myb-like DNA-binding domain 14 43 IPR001005 -
Sebi468g00051 69 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 44 - -
Sebi468g00051 69 ProSiteProfiles Myb-like domain profile. 9 43 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi468g00051 Sebi-Chr468 627181 627519 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi468g00051 1 47 MYB Transcription Factor Family AT1G34670 63.830 1.13e-20 81.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi468g00051 Myb_DNA-binding 2e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi468g00051 K09422 - gmx:100782075 97.8265