Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi468g00028 ATGACCAAGTTGGAGGTCTTCTCTGGTATTTTAAGCAACAATGCCACCCTTAATCCAGACTTTTACAATTGGAACCGTGTGAAGCTGAGATATTGTGATGGAGCTTCATTTACTGGAGACAATGTGTTCAATAATGGGACAACAAAGCTTTACTTCAAAGGGCAAAAGATTTGGGAAGCCATTATTGAAGACCTTCTACCAAAAGGTTTGGGAAAGGCACGCAAGGCTTTGCTTTCAGGTTGTTCAGCAGGAGGTTTAGCGACCTTCCACCATTGTGACAACTTCGCCAAGTATTTGCCAATAAATGCTAGTGTTAAATGCTTGAGTGATGCAGGTTTTTTCCTTGACGAAAGAGATATAAGTTTGAACCACACTATGAGGTACTTCGTCAAAAGTCTAGTTTCATTGCAGGGGATAGAGCAGAACCTGAATAGAAACTGCACCAGCGCGCTGTTCTTTCCGGACTTGTGCTTCTTTCCACAGTATGCGTTGAGATACATATCGACACCATATTTTATCTTGAACTCTGCCTATGATGTATTCCAATTCCATCATATATTGGTGCCACCTTCTGCCGATATGCACGGACACTGGAACCACTGTAAGCTGAACCCAGCAGCATGCACACCCGACCAAATTAATACATTGCAAGGTTTTAGGCTCCACATGCTTGCAGCTTTGAGACCGTTCTATATATATTCAAGAAGAGGGGGAATGTTCATAAATTCATGTTTTGCTCATTGCCAAAGTGAATTACAAGATACATGGTTTGGAGCAGATTCTCCAAGAATAAACAATAAGCCCCTCTTCCCCACCCCTTCTCTCCATTTCATCATAGTGCTTAACTTCAATGCATATGCATTTCAAGTAAAGCTCAGCAACAACAAGAATTGCACGAAAAGGAGACACACTCCCACTCCCTTCATCACAAGAAGCAATTGGGTTGTCCCTAAGGCAATAATGCGTTGCTCTTCCTTCAGCTCTCACTCTGGCGGTGATGACACCAACGACATCAACAACAATAACGGTGCCTCATTCCGCAACTTCAAGCTGAACGAGTCAACCTTCTTGGCTTCCCTCATGCCCAAGACAGAGATTGGCGTCGACCGTTTCCTCCATTCTCATCCACACTACGATGGCCGTGGTGCTCTCATCGCTATCTTCGATTCTGGTGTAGATCCAGCTGCTGCTGGATTACAGGTTACCTCAGATGGGAAACCAAAAATTCTTGATATCCTTGATTGCACTGGGAGTGGAGATATTGATACCTCAAAGGTGGTGAAGGCTGATGCTGATGATTGTATATCTGGGGCATCAGGAGCATCTTTGGTTATCAATACTTCATGGAAAAATCCATCTGGTGAATGGCATGTGGGTTATAAATTGGTTTACGAGCTCTTTACAGAAAAATTGACTTCTCGTTTGAAGACAGAAAGAAAGAAAAAATGGGACGAGAAAAACCAGGAGGAAATTGCTAAGGCTGTCAAACAACTTAATGATTTTGATCAGCAACACATCAAGTTGGAGGATGCAAAACTTAAAAAGGCTGGTGAAGATCTCCAGCATAGACTTGATCTTCTTAGAAAGCAATCTGAGAGCTACAATGATAAAGGGCCTGCCATAGATGCTGTCGTCTGGTATGATGGAGAGGTTTGGAGGGTTGCTCTTGACACACAGAGTCTTGAGGATGATCCAGATTGTGGGAAGCTTGCTGACTTTGTACCCTTAACTAATTATAGGACTGAGAGGAAGTATGGCGTCTTCAGCAAATTAGATGCTTGTACATTTGTTGCGAATGTCTATAATGATGGGAATGTCTTAAGTATTGTAACAGACAGCTCTCCTCATGGCACCCATGTTGCTGGTATAGCTACTGCATTCCACCCAGAGGAACCTTTGTTAAATGGAGTTGCGCCTGGAGCACAATTAATATCGTGTAAAATTGGGGACTCTCGCTTAGGTTCAATGGAAACTGGAACTGGTTTGACTCGGGCACTGATAGCTGCTGCAGAGCATAAATGTGATCTTATCAACATGAGTTATGGTGAGCCAACATTGCTGCCAGACTATGGACGCTTTGTTGACCTTGTGAATGAAGTGGTAAGCAAACACCGTCTGATATTCGTGAGCAGTGCTGGTAATAGTGGGCCAGCATTAAGCACTGTTGGTGCACCTGGTGGTACATCTTCAAGTATTATAGGTGTTGGCGCTTATGTTTCTCCTGCTATGGCAGCTGGTGCCCACTGTGTTGTTGAACCACCATCCGAGGGGCTTGAATACACTTGGTCTAGCCGAGGACCAACAGTTGATGGAGATCTTGGTGTTTGTGTAAGTGCTCCTGGTGGTGCTATTGCTCCTGTTCCTACATGGACTCTTCAACGACGTATGCTCATGAATGGGACATCAATGGCATCTCCATCAGCCTGTGGGGGAATTGCATTGCTCATAAGTGCAATGAAGGCTGAGGGAATTCCTGTGAGTCCATTTAGTGTGAGGAAGGCCCTTGAGAATACATCTGTTCCCATAGATCCTTCATCACGGGGCATATACCTGAGGGAGGCTAATGCTTGCCGACAATCTACTGAGTGGACTGTGCAAGTTGATCCAAAATTTCATGAAGATGCCCACAAGCTTGAAGAATTGGTTGTATTTGAGGAGAGCATAGAGTTACACTCTTCGGATAGGACAGTTGTGAAAGCCCCCGAGTACCTAATGCTCACTCATAATGGCCGTACCTTCAACATATTTGTGGATCCTACCAATCTGTGTGATGGTCTGCATTATTATGAGGTCTATGGTATTGACTGCAAAGCACCATGGCGTGGTCCTCTTTTCAGAATTCCAATTACTATAACCAAGCCTGTGGCTGTAACTAATAGACCTCCACAGGTTTCATTTTCAAAGATGATATTCCAGCCAGGCCATATAGAAAGGAAATATATAGAAGTGCCACAAGGTGCATCTTGGGTTGAAGCAACCATGAACACTTCAAGTTTTGATACAGCTCGAAGATTTTTTGTGGACACAGTTCAGATATGTCCATTGCAAAGACCTATTAAATGGAGGAATGTGATAACTTTTTCTTCTCCTGGTGCCAAAAGCTTCATCTTTAGGGTAGTAGGGGGTCAGACATTGGAACTAGTCATAGCTCAGTTTTGGTCAAGTGGCATAGGGAGTCATGAGACAACCAGTGTGGATCTTAAGGTAACAGAATTCATGTTTGTATGA 3228 0.4371 MTKLEVFSGILSNNATLNPDFYNWNRVKLRYCDGASFTGDNVFNNGTTKLYFKGQKIWEAIIEDLLPKGLGKARKALLSGCSAGGLATFHHCDNFAKYLPINASVKCLSDAGFFLDERDISLNHTMRYFVKSLVSLQGIEQNLNRNCTSALFFPDLCFFPQYALRYISTPYFILNSAYDVFQFHHILVPPSADMHGHWNHCKLNPAACTPDQINTLQGFRLHMLAALRPFYIYSRRGGMFINSCFAHCQSELQDTWFGADSPRINNKPLFPTPSLHFIIVLNFNAYAFQVKLSNNKNCTKRRHTPTPFITRSNWVVPKAIMRCSSFSSHSGGDDTNDINNNNGASFRNFKLNESTFLASLMPKTEIGVDRFLHSHPHYDGRGALIAIFDSGVDPAAAGLQVTSDGKPKILDILDCTGSGDIDTSKVVKADADDCISGASGASLVINTSWKNPSGEWHVGYKLVYELFTEKLTSRLKTERKKKWDEKNQEEIAKAVKQLNDFDQQHIKLEDAKLKKAGEDLQHRLDLLRKQSESYNDKGPAIDAVVWYDGEVWRVALDTQSLEDDPDCGKLADFVPLTNYRTERKYGVFSKLDACTFVANVYNDGNVLSIVTDSSPHGTHVAGIATAFHPEEPLLNGVAPGAQLISCKIGDSRLGSMETGTGLTRALIAAAEHKCDLINMSYGEPTLLPDYGRFVDLVNEVVSKHRLIFVSSAGNSGPALSTVGAPGGTSSSIIGVGAYVSPAMAAGAHCVVEPPSEGLEYTWSSRGPTVDGDLGVCVSAPGGAIAPVPTWTLQRRMLMNGTSMASPSACGGIALLISAMKAEGIPVSPFSVRKALENTSVPIDPSSRGIYLREANACRQSTEWTVQVDPKFHEDAHKLEELVVFEESIELHSSDRTVVKAPEYLMLTHNGRTFNIFVDPTNLCDGLHYYEVYGIDCKAPWRGPLFRIPITITKPVAVTNRPPQVSFSKMIFQPGHIERKYIEVPQGASWVEATMNTSSFDTARRFFVDTVQICPLQRPIKWRNVITFSSPGAKSFIFRVVGGQTLELVIAQFWSSGIGSHETTSVDLKVTEFMFV 1075
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi468g00028 1075 Gene3D Peptidase S8/S53 domain 545 842 IPR036852 GO:0004252|GO:0006508
Sebi468g00028 1075 ProSiteProfiles Serine proteases, subtilase domain profile. 365 858 - -
Sebi468g00028 1075 PANTHER NOTUM-RELATED 1 272 IPR004963 GO:0016787
Sebi468g00028 1075 FunFam Tripeptidyl-peptidase 2 833 962 - -
Sebi468g00028 1075 CDD Peptidases_S8_Tripeptidyl_Aminopeptidase_II 360 842 IPR034051 GO:0006508|GO:0008240
Sebi468g00028 1075 FunFam Tripeptidyl-peptidase 2 homolog 540 859 - -
Sebi468g00028 1075 Gene3D - 843 965 IPR046940 -
Sebi468g00028 1075 ProSitePatterns Serine proteases, subtilase family, serine active site. 800 810 IPR023828 -
Sebi468g00028 1075 SUPERFAMILY Subtilisin-like 366 842 IPR036852 GO:0004252|GO:0006508
Sebi468g00028 1075 Gene3D - 424 495 - -
Sebi468g00028 1075 Coils Coil 517 537 - -
Sebi468g00028 1075 PRINTS Subtilisin serine protease family (S8) signature 612 625 IPR015500 -
Sebi468g00028 1075 PRINTS Subtilisin serine protease family (S8) signature 380 399 IPR015500 -
Sebi468g00028 1075 PRINTS Subtilisin serine protease family (S8) signature 799 815 IPR015500 -
Sebi468g00028 1075 ProSitePatterns Serine proteases, subtilase family, histidine active site. 616 626 IPR022398 -
Sebi468g00028 1075 FunFam Tripeptidyl-peptidase 2 424 485 - -
Sebi468g00028 1075 Pfam Subtilase family 380 839 IPR000209 GO:0006508|GO:0008236
Sebi468g00028 1075 Pfam Pectinacetylesterase 1 268 IPR004963 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi468g00028 Sebi-Chr468 320648 343397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi468g00028 1 272 Carbohydrate Esterase AT5G23870 68.864 7.71e-130 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi468g00028 K01280 - gmx:100787184 1367.06