Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi468g00021 ATGCCAGAATCTGAGGAAGAAAATACAGACTTTCCTCCCAGGGCAAAGCCAACAGAGGAACCTGGGTGTGCCATGGATTTTGATCTGGACCTGGAAAGTTCATGGGCTTTGGATCACATGTCCTTTGTCTCCAACCCCATGTCTCCTTTTCTGTTCTCCACCATCTCTGACCAACCTTCTTCTCCTCTATGGGTTTTTCCTGATGGAGAAGATGACAGGCAAGCCAGGCTTGCAGCTTCAGCCTTCTCTGATTGCCACAAGATCTTCTCTTGTGATTCAAATTCAATAATTGAGAAGCCAGTGGAGAATGATGAGAGCAAAAAGATTTTGCCACCCCTACAGCCACCAATAGAAAATTTGGATGGCTTTTGTGTAATCAAGGAAAGGATGACACAAGCACTTCGCTACTTCAAAGAATTGACTGAACTGAATGTTCTGGCTCAGGTTTGGGCACCAGTGAGGAATGGCAATCGGTATGTGCTTACAACTTCAGGTCAACCCTTTGTTCTTGATCCACATAGTAATGGACTCCATCAGTATAGAACTGTCTCCCTGATGTACATGTTTTCTGCGGATGGAGAGAATGATGGAACTCTGGGACTTCCTGGTCGAGTTTTTCAGCAGAAGTTACCAGAATGGACTCCCAATGTTCTGTACTATTCTAGTAAAGAGTATCCACGCCGAGATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCTTTGCAGTCATGTGTTGGTGTGCTGGAGTTGATAATGACTTCACCAAAGATTAACTATGCTCCTGAGGTTGAAAAAATCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTCTGGACCATTCATTCACTCAGATTTGCAATGAAGGACGTCAGAATGCATTATCAGAGATCTTGGAGATATTGACAGTGGTGTGTGAAACTCATAATTTACCTCTGGCTCAAACATGGGTTCCCTGTAAGCATAGGAGTGTTTTGGCCCATGGTGGTGGTCTAAAGAAAAATTGTTCTAGTTTTGATGGTAGTTGCATGGGGCAAGTTTGCATGTCTACAACTGATATAGCATCCTATATCATAGATGCTCATTTGTGGGGTTTCCGGGAGGCCTGTGTTGAGCATCACTTGCAACAAGGTCAAGGGGTTGCTGGGAGGGCTTTTTTGTCCCAAAGCATGTGCTTCTGCTCAAACATTACCCGATTCTGCAAAACTGATTACCCCTTAGTTCATTATGCCCTCATGTTTGGGTTAACAAGTTGTTTTGCAATCTGTTTACGGAGCTCTCATACAGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAAGATTATAGACTTTCATGAACAGAAGACACTGCTGGGATCTATATTGGCAACAATGAAACAACATTTCCAGAGTCTTAAGATTGCTGCTGGTGTTGAACTTGAGGAGCATGGTTCAATTGAAATTATTGAAGCAGCAAATGAAATAGTTAATCTTAGGCTTGAACCTATTACAATTGCTCAATCTATTAAATCACCGCATATACCTGATTCCTCACCAAATATTGGGGAGGAAGTGGCACAGGATCCATCAGAACAACAAATACTGTACTGTAATGACATAAATGAAGGAGGGAGTCATGGTGATAATGCAGGTGGAAGCATTAATCATATATCCTCCTTAGAGGCTAAAAACATAAAGAAACCCTTGGAAAGGAAACGTGGAAAAACTGAGAAATCAATTAGTCTTGAAGTTCTACAACGTTATTTTGCTGGGAGTCTTAAAGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGACAGCATGGGATATCCCGTTGGCCATCACGAAAGATCAACAAGGTTAACCGTTCCTTGACCAAGCTCAAGCGTGTTATTGAATCTGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAATTCTCTCAACACAAGTCCACTTCCAATTGTTGGTTCCTTTCCTGAGCCTACTACTCCAAATAAGTTCAGCCAGCAAGCCTCATTAAGCATTGGGCCTTCAGAGCCTCAGATGAAAGAGAATGAATTTGATGCATCTAAAGTATTTGAAGCAAACAGACAGGTTGGAATGGAAGATCAATTGCTAGGAGGAAGGATACAAAGTCTTGAGAAAGTGATTAATGATAAAGGCGGTTCTACTCGGGAGGTTGGGAAAGATCCAAAAAAGACTAGAACTAGGAGTGGCTCAAGTGAAGATAGTACAAATCCTACTTCTCATGGTTCATGCCATGGCAGTCCCCCAAATGAAAGTTCACCTGTAAAAGATATATTCATTACATCCAACAATGAGCAATGTGTTTTGCTGAGGGGATCACCAGAGTCAACAATGCAGCCAATTAATACATTGAACTCTCCAACCTCTTACCATAGGCCTGACATTGTGGCCACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGAGGATGCTGGTAGCTCTAAAGACTTAAGAAATTTGTGTCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGCTCCAGAAGCTTGTGGGACTAATCCTCCAGGTTCTGAATTGGCTCCTAAGCAGTGTATGGATACTCTTAATAAAACAGTGACACCTTTTGCAGCTAGGAAAGATGTGAAGAGTGTGACTATAAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCGTTGACCTGTGGCATTGTGGAATTGAAAGAAGAAGTTGCCAAAAGGTTGAAATTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATATTTCAAGATCATCAGGAAGCAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA 2964 0.4238 MPESEEENTDFPPRAKPTEEPGCAMDFDLDLESSWALDHMSFVSNPMSPFLFSTISDQPSSPLWVFPDGEDDRQARLAASAFSDCHKIFSCDSNSIIEKPVENDESKKILPPLQPPIENLDGFCVIKERMTQALRYFKELTELNVLAQVWAPVRNGNRYVLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSADGENDGTLGLPGRVFQQKLPEWTPNVLYYSSKEYPRRDHAQHYNVRGTLALPVFEPSLQSCVGVLELIMTSPKINYAPEVEKICKALEAVNLRSSEILDHSFTQICNEGRQNALSEILEILTVVCETHNLPLAQTWVPCKHRSVLAHGGGLKKNCSSFDGSCMGQVCMSTTDIASYIIDAHLWGFREACVEHHLQQGQGVAGRAFLSQSMCFCSNITRFCKTDYPLVHYALMFGLTSCFAICLRSSHTGNDDYVLEFFLPPKIIDFHEQKTLLGSILATMKQHFQSLKIAAGVELEEHGSIEIIEAANEIVNLRLEPITIAQSIKSPHIPDSSPNIGEEVAQDPSEQQILYCNDINEGGSHGDNAGGSINHISSLEAKNIKKPLERKRGKTEKSISLEVLQRYFAGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLTKLKRVIESVQGAEGAFGLNSLNTSPLPIVGSFPEPTTPNKFSQQASLSIGPSEPQMKENEFDASKVFEANRQVGMEDQLLGGRIQSLEKVINDKGGSTREVGKDPKKTRTRSGSSEDSTNPTSHGSCHGSPPNESSPVKDIFITSNNEQCVLLRGSPESTMQPINTLNSPTSYHRPDIVATELQEPFGGMLIEDAGSSKDLRNLCPSVAEAILEDLAPEACGTNPPGSELAPKQCMDTLNKTVTPFAARKDVKSVTIKATYREDIIRFRVSLTCGIVELKEEVAKRLKLEVGTFDIKYLDDDHEWVLIACDADLQECMDISRSSGSNIIRVLVHDITSNLGSSCESSGE 987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi468g00021 987 MobiDBLite consensus disorder prediction 731 751 - -
Sebi468g00021 987 Gene3D - 889 973 - -
Sebi468g00021 987 SUPERFAMILY CAD & PB1 domains 892 977 - -
Sebi468g00021 987 MobiDBLite consensus disorder prediction 671 691 - -
Sebi468g00021 987 MobiDBLite consensus disorder prediction 1 22 - -
Sebi468g00021 987 MobiDBLite consensus disorder prediction 752 777 - -
Sebi468g00021 987 ProSiteProfiles PB1 domain profile. 892 974 IPR000270 GO:0005515
Sebi468g00021 987 FunFam RWP-RK domain-containing protein 889 973 - -
Sebi468g00021 987 MobiDBLite consensus disorder prediction 671 695 - -
Sebi468g00021 987 Pfam RWP-RK domain 585 633 IPR003035 -
Sebi468g00021 987 CDD PB1_NLP 893 973 IPR034891 -
Sebi468g00021 987 MobiDBLite consensus disorder prediction 728 777 - -
Sebi468g00021 987 PANTHER PROTEIN NLP8 57 986 IPR045012 GO:0003700
Sebi468g00021 987 Pfam PB1 domain 893 973 IPR000270 GO:0005515
Sebi468g00021 987 ProSiteProfiles RWP-RK domain profile. 572 653 IPR003035 -
Sebi468g00021 987 SMART PB1_new 892 974 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi468g00021 Sebi-Chr468 253362 257647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi468g00021 873 987 NLP Transcription Factor Family AT1G64530 56.034 1.69e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi468g00021 PB1 3e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi468g00021 - - gmx:100786118 1681.38