Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi468g00015 ATGGGTAGCATTGAAGAAGGGGTTGCGGTTGCAGAAGAGCGAGTGGAGGGTGTGGAAGACACAGTGTACGTTGCGGTGGGAAAGAACGTAGGGAAGAGCCAACAACTGTTGCATTGGGTAGCTCAGAATTTATGTGGCAAAAATATTTGTCTTCTTCATATTCACCAACTCGAGCCTGTCAATTCCTTGATTAATACTATGTCTGTTGTGGATATCTTTGTTCTTGGTAGGGTACAGGCCTATAAATTGTTGATTGAGAAAGAAGATATTGAGAAGGGGATCATAGAAGCAATTTCTCAACACAGTATTAGATGGCTTGTAATGGGAGCAACAGCAGACAAATATAATAAACTGGCTGAGCAAGTGTCGGAGAAATCTATTCTTGTACGTGAACAAGCATTGCTATCCTGTAACATTTTGTTCATTTCCAAGGGCAGCCTCATATGTTCTAGGGTAGATTGTACACATAAATCTGAAATAGAGACCGCGCCTGCATTGTTGGTGCTCAATTCAAATATGGAAGCCAAACAAGCAGAAAAGATTAAATCAGAATCAATTCCTGATGCATTGAAATATTTAGATTCTGATGATATGGAAGAGATTGAAAGTGTCAGTTCCCATTGTTCATTAACTGCAGAATGGTCCTTTAATAGTGTTATTGGCAGGTCAAAGTTGACAAATTTTCTGTTTCATGAGGAAGAAGAAAATGAAAGGGAGCAAGCAAGTAAAATAAATGGTAGAATGGATAAAACCATCATGGATGCTAAGAGCATGAAATGGATAGGAATTGGAGAGGCATTAAAGAGATGGAAAGATGAAGCATTAGAAAGCCGTTGTGTTAAAGAGATGAGTAGAAGAAAAGAAGTTGAAGAACAATTGGTAAGGGAAAAGCAAGAAGCACAGAAAATGAAGAATCAACGAGATGAAATAATGTCTGAATTGCAATTGGTCCAAAACCAAGTTTCTGCACTTAAGAACCAGTTTTTAGAGTCCCAAAGTACGGTGACAGAGTTGGAGGAAAAGATCATATCAGCTGTGAACCTGTTGATAAGTTTCAGGGAAAAACGAGATAAACTAAGGATAGAACATGCAGATGCAGTTAGGAAAGTCAAAGCGCTGAGAAAATTTAGAGAAGCAGATACTAGTATGTTATCTTATGTGGTAGAATTCCCTTCATTCTCTTTCATGGAGATCAATGAAGCAACTCACGATTTTGACCCATCTTGGAAGATTGGAGAGGGAAGGTATGGAAGTGTTTACAAGGGACTGCTTCGGAACATGCATGTTGCCATAAAAATGTTACCCTCTTATGGTTGTCAGAGCCAATTGGAGTTTCAACATCAGGTAGAGGTTTTGAGTAGGGTAAGACATCCAAACCTGTTAACACTAATTGGAATCTGTGCGGAGTCAAGGTCACTTGTGTATGAGTACCTAAACAATGGCAGCCTTGAAAGCCACCTTGCCCAGAAAGACAAGACTCCACTTCCATGGCAAATTCGAATATCCATTGCTACTGACATATGCTCTGCTCTAATCTTCCTTCACTCCAGTGAGCCTTGTATTATCCATGGAAATTTGAAACCTAGTAAGGTCCTCCTTGATGCTAACTTTGTTGCCAAACTTGGTGACTTGGGCATTCCTTGTTTAGTCCATCAAAGTGTGGATTCAGCTGACACAAGCATAATACGTAATGATCCAAATAGAAGTTTAGCGTATATGGATCCAGAGTATCTTGTCACTGGCAAGTTTACACCAGAATCAGATATATATTCATTTGGAATCATATTGTTACAACTTCTTACTGGAAGACCACTTTCGGGTCTAGTTAGAGATATGAAATGTGCATTGGAAAAGGAAAACCTTAAAGCAGTGTTGGACTTTTCAGCTGGTGAATGGCCACTTTATCAAACCAAACAGCTGGCACATTTAGCCTTTAGGTGTTGTGAAAAGACTTGGTTGAATCGGCCAGACCTTGTGTCAGAAATCTGGAGTGTTCTTGAACCATTCAGAACTACTTGCATCAACATGGCACCGAATTTGACTTCTAAGAAGCTTCAACGTGCTCCTTCCCATTTTGTCTGCCCCATTGTCCAGGAAGTTATGGAAGATCCATACATAGCTGCCGATGGTTTTACATATGAAGAAGAGGCAATAAGAGAATGGTTGAAAAGTGGTCACGACACTTCCCCCATGACAAACCTCAAGCTTGAACACACAAATTTGGTACCTAACTATGCGCTACATAATGCCATTCAGGAGTGGCAGCAACAGTGA 2274 0.4011 MGSIEEGVAVAEERVEGVEDTVYVAVGKNVGKSQQLLHWVAQNLCGKNICLLHIHQLEPVNSLINTMSVVDIFVLGRVQAYKLLIEKEDIEKGIIEAISQHSIRWLVMGATADKYNKLAEQVSEKSILVREQALLSCNILFISKGSLICSRVDCTHKSEIETAPALLVLNSNMEAKQAEKIKSESIPDALKYLDSDDMEEIESVSSHCSLTAEWSFNSVIGRSKLTNFLFHEEEENEREQASKINGRMDKTIMDAKSMKWIGIGEALKRWKDEALESRCVKEMSRRKEVEEQLVREKQEAQKMKNQRDEIMSELQLVQNQVSALKNQFLESQSTVTELEEKIISAVNLLISFREKRDKLRIEHADAVRKVKALRKFREADTSMLSYVVEFPSFSFMEINEATHDFDPSWKIGEGRYGSVYKGLLRNMHVAIKMLPSYGCQSQLEFQHQVEVLSRVRHPNLLTLIGICAESRSLVYEYLNNGSLESHLAQKDKTPLPWQIRISIATDICSALIFLHSSEPCIIHGNLKPSKVLLDANFVAKLGDLGIPCLVHQSVDSADTSIIRNDPNRSLAYMDPEYLVTGKFTPESDIYSFGIILLQLLTGRPLSGLVRDMKCALEKENLKAVLDFSAGEWPLYQTKQLAHLAFRCCEKTWLNRPDLVSEIWSVLEPFRTTCINMAPNLTSKKLQRAPSHFVCPIVQEVMEDPYIAADGFTYEEEAIREWLKSGHDTSPMTNLKLEHTNLVPNYALHNAIQEWQQQ 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi468g00015 757 ProSitePatterns Protein kinases ATP-binding region signature. 411 432 IPR017441 GO:0005524
Sebi468g00015 757 Pfam U-box domain 688 756 IPR003613 GO:0004842|GO:0016567
Sebi468g00015 757 SUPERFAMILY RING/U-box 685 757 - -
Sebi468g00015 757 SUPERFAMILY Protein kinase-like (PK-like) 382 666 IPR011009 -
Sebi468g00015 757 SMART Ubox_2 691 754 IPR003613 GO:0004842|GO:0016567
Sebi468g00015 757 CDD RING-Ubox_WDSUB1-like 689 744 - -
Sebi468g00015 757 ProSiteProfiles U-box domain profile. 687 757 IPR003613 GO:0004842|GO:0016567
Sebi468g00015 757 PANTHER OS02G0152300 PROTEIN 22 753 - -
Sebi468g00015 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 687 757 IPR013083 -
Sebi468g00015 757 Pfam Protein tyrosine and serine/threonine kinase 410 658 IPR001245 GO:0004672|GO:0006468
Sebi468g00015 757 Coils Coil 279 341 - -
Sebi468g00015 757 ProSiteProfiles Protein kinase domain profile. 405 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi468g00015 757 Gene3D Phosphorylase Kinase; domain 1 376 477 - -
Sebi468g00015 757 Gene3D Transferase(Phosphotransferase) domain 1 478 673 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi468g00015 Sebi-Chr468 170731 178709 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi468g00015 60 757 U-box Gene Family AT3G49060 45.676 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Sebi468g00015 PK_Tyr_Ser-Thr 4.7e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi468g00015 - - aprc:113871315 1060.44