Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi468g00013 ATGCCAGTTGCAAAACTTACAGCCTCTGGCACTCCCAATTTCATGAAAACAGAAGATGGAAATGATTCTTTAGATACCATAATCAAACAAGCAATTGGAAAAGAACCTTTCCTTTCCTTTCCTAGGGCCGGTGACAGCCCAGTACAGTGGATTCAATTACTTCATGCTTTGGATCAGCAAGAACTTCCAGGGTGGCCTTTGCTCTCTCCTGTGAAGGTTCAGTTACAGAAGTGCGACAAGTGTTCTCGAGAGTTTTGCTCTCCCATTAACTATAGAAGACATATACGTGTACACCATCGGTTGAAAAAGCTTGATAAGGACTCTAAAAAAAATAGGGATCTTTTAGGGGCATATTGGGATAAGCTCTCTGTAGAAGAGGCAAAGGAAATTGTGTCGTTCAAGGATGTGATGCTGGAGGAAGTTCCAGGGTCTTCAATTTTAAAAGCTCTGACAAATCTTAGAAAACAAGGATTTTCTCCTCTACCACAGTATTATCTGAGGGCTGGTTCTGCACTTTTGGATATTGTTCAATCTAGGCCTTCTAGTTTTCCTATATCTTCCCAAGAGTTGTTCAGTATCCTTGATGATTCCAGTGAGAAAACCTTTTTATGTGGAACAGCGGTGTCAATGCAAAGATATATTTTTGATGGAGAGGCTGGAAAGATTGGTCTTGAACCAAAAAACCTAGTTGCTTGCACAAGTTTCTTGCTAGAGCAGAAATTGGAAAAAGATGTGCCAGTGGAACCAAAGTTCATGGCATATCCTGTATCTACATATACAAACTTAAGACCTGATTCTATTATAACTAATGTGAAACGTGTGTTTCCTAAAGTAATTCTTATTGTCATGATGAAATATGCATTTCCTTTCACACAGGTGAAGGCATGGCTTGCTGACAAGGATGCTGAAGCATTGAGATGCCAGAAGCTTTTGGTGGAGGAGGAGGAAGCTGCTCAGAAAAGACAAGCTGAGATTTTAGACAGGAAACGCCAGAAAAAGCTTAGACAGAAAGAACACAAGGCGAGGGAAAGACTTGTAGATGACTCAGAAATTAAAGGGAACATCAGCAGCACAGGAGAGGATGTATCAGCAGCAGAAGCATCTTTGGCTGAATGTGACTTTGAAGTTAATAATAATCCAGATATATTTGTAGATGATACTCCTTCACCACATAATTCTCAAATGTCAAAGCCTGGAGTTATTCAAAAATACGGAACCAGCCGTGATCAAAGGGTCACTCCTATAGTTAACGGTAGTAAAGTTTGGAGCCGGAAGCCTAAACCAGAAACTAATGGGATGGTTTTAAAAGCCAGACAGCATAAGGAACCAGATGAAGGGGACTGCTTGGTAGAGAATCTGGCCAAACCAATCACTGCGCAGGAGAAGCCAATGAAACTTGAGTCCGTCCAGGGAGGCAACAGTAGGTTTACAGTCAAGCTTTGGAGACCTGTTAGCCAGCATGGAACGAAAGATCCGATGCCACTTCAAAGTAGTTGGACAGAAGCTGATGTAGTTCATGGAAAGGATGATCAAAATTTGTCAGGTCAAAGTAGTTTAAGGTTTTGTAATATAGATGGTAGTGATAATGGATTCGGGAACGACTCCCTTATTGGGGCTAAAGTAGATCGAGAAAGATTACAGTTATCCTGCCATGCTGCAAAAGCCTTTCTTGCGCAGAGATGGAAAGAAGCGATCTCATCAAACCATGTGAAATTGGTTGTTTCACCTGATTCTGAACCTCCTGGATCTCAGCGGGTCCAGGATTCTGAACCAGCAGCATGTCAATCTTCTAATGTGGACAGATGTAGCAATCTTGCAAATACAGAGAACCGGTTGCCTGCAACCTCTGGAGTAGCTAAATCCAAACCCAGAATGAAGCCTGAGAAGGGAATCAAGATAAAGTACATTCCCAAACAAAAAGCAGCAGCCTAG 1932 0.4182 MPVAKLTASGTPNFMKTEDGNDSLDTIIKQAIGKEPFLSFPRAGDSPVQWIQLLHALDQQELPGWPLLSPVKVQLQKCDKCSREFCSPINYRRHIRVHHRLKKLDKDSKKNRDLLGAYWDKLSVEEAKEIVSFKDVMLEEVPGSSILKALTNLRKQGFSPLPQYYLRAGSALLDIVQSRPSSFPISSQELFSILDDSSEKTFLCGTAVSMQRYIFDGEAGKIGLEPKNLVACTSFLLEQKLEKDVPVEPKFMAYPVSTYTNLRPDSIITNVKRVFPKVILIVMMKYAFPFTQVKAWLADKDAEALRCQKLLVEEEEAAQKRQAEILDRKRQKKLRQKEHKARERLVDDSEIKGNISSTGEDVSAAEASLAECDFEVNNNPDIFVDDTPSPHNSQMSKPGVIQKYGTSRDQRVTPIVNGSKVWSRKPKPETNGMVLKARQHKEPDEGDCLVENLAKPITAQEKPMKLESVQGGNSRFTVKLWRPVSQHGTKDPMPLQSSWTEADVVHGKDDQNLSGQSSLRFCNIDGSDNGFGNDSLIGAKVDRERLQLSCHAAKAFLAQRWKEAISSNHVKLVVSPDSEPPGSQRVQDSEPAACQSSNVDRCSNLANTENRLPATSGVAKSKPRMKPEKGIKIKYIPKQKAAA 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi468g00013 643 ProSiteProfiles Zinc finger C2H2 type domain profile. 76 103 IPR013087 -
Sebi468g00013 643 SMART c2h2final6 76 98 IPR013087 -
Sebi468g00013 643 ProSitePatterns Zinc finger C2H2 type domain signature. 78 99 IPR013087 -
Sebi468g00013 643 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 382 - -
Sebi468g00013 643 MobiDBLite consensus disorder prediction 580 615 - -
Sebi468g00013 643 MobiDBLite consensus disorder prediction 575 643 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi468g00013 Sebi-Chr468 156468 162035 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi468g00013 18 640 C2H2 Transcription Factor Family AT4G25610 38.227 1.27e-128 390
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi468g00013 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi468g00013 - - gmx:100789003 772.696