Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi467g00015 ATGTCCACAGACGAGATCACAAAAATAGAAGAAGGTGGAATTAAGGCACAAAGGGATTCTGGGTGTTGCGGTTCTCCTGGGGTTGTTAGTGTCATACAAAAGGTAATAGCAGAGGTAATAGGGACATACTTCTTAATATTTGCAGGGTGTTCCTCTGTTGTTCTGAATAAAATAGAACAGAGTAAAGGGACAATAACATTTCCAGGAATTTGTGTGGTATGGGGTCTAATAGTGATGGTTTTGGTTTATGCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTAACCGTTAGCTTTGCCATTTATCGTCATTTCCCTCTGAAACAGGTGCCATTGTATATTATTGCACAGGTCCTAGGATCTATCCTTGCTAGTGGGACATTGTACCTTCTCTATGATGATCTAAATGAAACAACTTATTTTGGAACTGTACCAACAGGATCTGATGTTCAATCCCTTGTTGTTGAGATCCTCACATCATTTCTCTTGATGTTTGTTGTCTCTGCGGTTTCTACAGACAATAGAGCAATTGGAGAATTGGCAGGGATTGCTGTTGGGATGACAATCATAATAGACGTCTTCATTGCTGGGCCTGTATCAGGGGCATCAATGAACCCAGCTAGAAGCCTTGGACCTGCAGTGGTGATGCATATCTACAATGGATTTTGGGTTTATATTGTTGGACCATTTGTTGGTGCAATACTAGGTGCCTCAGCCTACAACCTTATTAGATTTACTGACAAACCACTTAGAGAACTTAGTGCAAGTTCAAGTTTCTTCAAAAGATCAAGTTTTCGGTAG 807 0.4089 MSTDEITKIEEGGIKAQRDSGCCGSPGVVSVIQKVIAEVIGTYFLIFAGCSSVVLNKIEQSKGTITFPGICVVWGLIVMVLVYALGHISGAHFNPAVTVSFAIYRHFPLKQVPLYIIAQVLGSILASGTLYLLYDDLNETTYFGTVPTGSDVQSLVVEILTSFLLMFVVSAVSTDNRAIGELAGIAVGMTIIIDVFIAGPVSGASMNPARSLGPAVVMHIYNGFWVYIVGPFVGAILGASAYNLIRFTDKPLRELSASSSFFKRSSFR 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi467g00015 268 NCBIfam MIP family channel protein 37 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 SUPERFAMILY Aquaporin-like 30 253 IPR023271 -
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 157 175 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 74 98 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 225 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 188 210 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PRINTS Major intrinsic protein family signature 111 130 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 ProSitePatterns MIP family signature. 92 100 IPR022357 -
Sebi467g00015 268 Gene3D Glycerol uptake facilitator protein. 11 256 IPR023271 -
Sebi467g00015 268 CDD MIP 33 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 Pfam Major intrinsic protein 29 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi467g00015 268 PANTHER AQUAPORIN NIP2-1 20 260 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi467g00015 Sebi-Chr467 313775 315907 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi467g00015 4 263 Major Intrinsic Protein MIP AT5G37820 62.738 1.33e-116 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi467g00015 K09874 - gmx:100819179 386.341