Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi466g00008 ATGCATATGGAGAAGACCAAAGGGGTGAGAAAAGGCGCATGGACATATGAGGAAGACAACCTACTAAAGGCTTGCATTAACAAGTATGGGGCAGGAAAATGGCATTTGGTTCCTGAAAAAGCAGGATTGAATAGGTGCCGAAAAAGTTGTAGATTGAGGTGGTTGAATTATTTAAATCCCAACATTAACAGAGGAAGCTTTGCTGAGGATGAAGTTGATATGATTCTAAGGCTACATAAACTCCTAGGCAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGGACAGCTAACGATGTGAAGAACTATTGGCACACACACTTAAGCAAGAAGAAGGTGACTAATTATAGCAAGGAAGACAAGAGAGAAAAAGAGAAACCAATAAAGGAAACGATGGAATCTCATGAAGTTATAAAACCTCGACCTCGAACTTTTTCAAATAAATCACCATGGTTGAAGGGAAAACACATTGTTGTAAATAATGGTGGTGGTGTAACTAGAGAGTGTGCTATGCCTCTAGTGGCTTCAAATAGTAATGTTTTGACTAGAGAGTGTGACACACAGACAACTATGCTCCCACTTGGTGGTGATGGTGTTGGTGATGATAATGCCCCACAGTGGTGGGAGAGTTTGTTGAACATTGATGAAGACAATAATGTAGGAAGTGAAAAAGTTGGCACATGCTCTTTGTCAAGTGAGAATTCCATCTTGGAGTTTCCAAATATGGAAAACTTCTTTACTCAAGGCCCCATTGGTATTGACTGTTTATGGGATTCCAACCTTGATTTTGATGTTCTTTGGGATCTTTAA 813 0.4022 MHMEKTKGVRKGAWTYEEDNLLKACINKYGAGKWHLVPEKAGLNRCRKSCRLRWLNYLNPNINRGSFAEDEVDMILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLSKKKVTNYSKEDKREKEKPIKETMESHEVIKPRPRTFSNKSPWLKGKHIVVNNGGGVTRECAMPLVASNSNVLTRECDTQTTMLPLGGDGVGDDNAPQWWESLLNIDEDNNVGSEKVGTCSLSSENSILEFPNMENFFTQGPIGIDCLWDSNLDFDVLWDL 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi466g00008 270 Gene3D - 2 64 - -
Sebi466g00008 270 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 6 136 - -
Sebi466g00008 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 6 58 IPR017930 -
Sebi466g00008 270 SUPERFAMILY Homeodomain-like 8 105 IPR009057 -
Sebi466g00008 270 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Sebi466g00008 270 FunFam Myb transcription factor 11 63 - -
Sebi466g00008 270 Gene3D - 66 138 - -
Sebi466g00008 270 ProSiteProfiles Myb-like domain profile. 6 58 IPR001005 -
Sebi466g00008 270 Pfam Myb-like DNA-binding domain 11 58 IPR001005 -
Sebi466g00008 270 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Sebi466g00008 270 SMART sant 10 60 IPR001005 -
Sebi466g00008 270 SMART sant 63 111 IPR001005 -
Sebi466g00008 270 CDD SANT 69 109 IPR001005 -
Sebi466g00008 270 CDD SANT 13 58 IPR001005 -
Sebi466g00008 270 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi466g00008 Sebi-Chr466 111876 113812 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi466g00008 4 150 MYB Transcription Factor Family AT1G66370 63.226 6.89e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi466g00008 Myb_DNA-binding 8.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi466g00008 - K16166 tpra:123921946 288.885