Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi465g00027 ATGGCCAAGAGTCCCCATCTCTTTCACTTTTTCCAGTTCTTGGCAGTGCTGTTACTCACTTCATACTCTATTTTCCCACCTTGTGTGTCTCTAGCATTGGAAGCCCAGGCTCTTCTTCAGTTCAAGAACCATTTGAAGGACCCCTTTAATTCTTTGGCTTCATGGAATGAATTAGGCTCACCATGTGAGTTTTATGGACTTACATGTGATCCAGCTTCTGGGAAAGTCACAGAAATCTCACTTGAGAATATGTCCCTCTCTGGTGACATTTTTCCATCACTCTCAGTTCTTCAGAGCCTGCAGGTTCTGTCACTACCATCCAATTTAATTTCTGGTAAGCTTCCATCAGAAATAAGTAGCTGCACCAACCTCAGAGTCTTGAATCTAACAGGGAATCAGCTGGTTGGATCAATCCCAGACTTGTCTATGCTGAGAAACCTGCAGGTTCTTGATCTTTCAGCAAACTACTTCTCTGGAAGAATCCCCAGTTGGGTGGGGAATCTAACTGGACTAGTTTCATTGGGTCTTGGGGAAAATGCATACACTGAGGGTGAGATTCCAGAGACTCTTGGAAATCTGAAGAACTTGACCTGGCTCTATCTTGGTGGCTCCCATTTGATAGGAGACATTCCAGAATCAATATATGAAATGAAGGCATTGGAGACACTGGACATTTCAAGAAACAAGATCTCTGGCAAACTCTCCAGATCAATTTCCAAGTTAAAGAATCTTTACAAGATTGAGCTCTTCTCAAATAATTTGACAGGAGAAGTCCCAGCTGAGCTAGCAAACCTCACCAAGCTGCAGGAGATTGACCTTTCTGCAAACAATATGTATGGTAGGTTGCCAGAGGAAATTGGCAATATGAAGAACTTGGTTGTTTTTCAACTATATGAAAACAGCTTTTCTGGAGAACTTCCTGCTGGATTTGGAGATATGCAACATCTCAATGGATTCTCAATATATAGAAACAACTTCACTGGGAGAATTCCAGAAAATTTTGGCCGATTTTCACCACTTGAAAGTATTGACATATCTGAGAATCAATTTTCAGGTGATTTCCCAAAGTTCTTGTGTGAAAGCAGGAAGTTGAGATTTTTGCTTGCATTGCAAAACAATTTTTCTGGGAGTTTTCCTGAGTCTTATGGTACATGCAAATCTCTAGAGAGATTTAGGATCAGTGGAAACCACTTATCTGGGAAAATTCCAGACAAGGTTTGGGCACTTCCATATGTAAAAATAATTGATTTTGGTTACAATGATTTCACTGGTGAGGTTTCTTCAGAAATTGGGTTTTCTACTAGCTTAAGTCAGATAGTTTTGATAAACAACAGGTTTTCAGGTAAGCTCCCATCAGAAATTGGCAAGCTGGTGAACTTGGAGAAGTTTTACTTGAACAACAATAATTTCTCTGGTGAAATACCACCTGAAATGGGATCTTTGAAGCAGCTATCCACTTTGCATCTAGAAGAGAATTCATTAACTGGATCAATACCCACAGAACTGGGTCATTGTGCAAGGCTGGTGGACTTGAACCTTGCTTGGAATTCTCTATCTGGAAATATCCCCCAGTCAGTTTCACTTATGAGCTCATTGAACTCTCTTAATATATCTGGAAACAAACTTACAGGTTCTATTCCAGATAATTTAGAGATAATGAAACTAAGCTCAGTGGATTTTTCTGAAAACCTTCTTTCTGGAAGAATTCCATCTGGTCTTTTTATTATTGGTGGAGAGAAAGCTTTTCTTGGAAACAAGGGACTGTGTGTTGAGGAAAACCTAAGACCTTTCATGAATTCTGATTTGAAGTTTTGTGGAAAAAATCATGGTCAGACAAGGGTCTTTGCTTATAAATTTGTCCTGCTCTTTTTCACTGCTTCTGTCTTTGTTGTTATTTTAGCTGGGTTGCTGTTTTTGAGTTGTAGAAGCCTCAAACATGGTGCTGATAAAAACTTAGAAAGTCAAAAGGAAGCGCGTCAAAAATGGAAACTTGCATCTTTCCACCAAGTAGATATTGATGCTGATGAAATATGTAATTTGGATGAAGATAATTTAATAGGAAGTGGTGGTACAGGAAAGGTTTATAGAGTGGAATTGAGGAAAAATGGTGGCACAGTGGCTGTAAAGCAACTGCAGAAAGGAGATGGTGTGAAGATTTTAGCTGCAGAGATGGATATTTTGGGGCAGATTAGGCATAGAAACATACTTAAACTTTATGCTTGTTTACTTAAAGGAGAACTTGCTTATACAATTGACATTACTGAAAGGAGTGATGTCTATAGCTTTGGAGTGGTGCTATTAGAATTAGTGTCTGGAAGAGAACCCGTTGAAGAGGATTATGGAGAAGCAAAGGATATTGTTTATTGGGTTTCTACACATCTGAATGACCGTGAAAGTATTGTCAACATTCTTGATGATAGAGTTGCATTGGAGTATGCTGAAGATATGATAAAAGTGTTGAAGATAGCTATTAAGTGCACCACTAAGCTTCCATCTTTACGCCCTACCATGAGAGAGGTTGTCAAGATGCTTATTGGTGCTGAACCTTGCACATTGAAATCTCATTACTGCGATCTTGACAATGATGCCAAGGATTTTCTCTAG 2604 0.3921 MAKSPHLFHFFQFLAVLLLTSYSIFPPCVSLALEAQALLQFKNHLKDPFNSLASWNELGSPCEFYGLTCDPASGKVTEISLENMSLSGDIFPSLSVLQSLQVLSLPSNLISGKLPSEISSCTNLRVLNLTGNQLVGSIPDLSMLRNLQVLDLSANYFSGRIPSWVGNLTGLVSLGLGENAYTEGEIPETLGNLKNLTWLYLGGSHLIGDIPESIYEMKALETLDISRNKISGKLSRSISKLKNLYKIELFSNNLTGEVPAELANLTKLQEIDLSANNMYGRLPEEIGNMKNLVVFQLYENSFSGELPAGFGDMQHLNGFSIYRNNFTGRIPENFGRFSPLESIDISENQFSGDFPKFLCESRKLRFLLALQNNFSGSFPESYGTCKSLERFRISGNHLSGKIPDKVWALPYVKIIDFGYNDFTGEVSSEIGFSTSLSQIVLINNRFSGKLPSEIGKLVNLEKFYLNNNNFSGEIPPEMGSLKQLSTLHLEENSLTGSIPTELGHCARLVDLNLAWNSLSGNIPQSVSLMSSLNSLNISGNKLTGSIPDNLEIMKLSSVDFSENLLSGRIPSGLFIIGGEKAFLGNKGLCVEENLRPFMNSDLKFCGKNHGQTRVFAYKFVLLFFTASVFVVILAGLLFLSCRSLKHGADKNLESQKEARQKWKLASFHQVDIDADEICNLDEDNLIGSGGTGKVYRVELRKNGGTVAVKQLQKGDGVKILAAEMDILGQIRHRNILKLYACLLKGELAYTIDITERSDVYSFGVVLLELVSGREPVEEDYGEAKDIVYWVSTHLNDRESIVNILDDRVALEYAEDMIKVLKIAIKCTTKLPSLRPTMREVVKMLIGAEPCTLKSHYCDLDNDAKDFL 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi465g00027 867 ProSiteProfiles Protein kinase domain profile. 680 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi465g00027 867 Gene3D Phosphorylase Kinase; domain 1 677 744 - -
Sebi465g00027 867 SUPERFAMILY L domain-like 60 397 - -
Sebi465g00027 867 Pfam Leucine Rich repeats (2 copies) 122 161 IPR025875 -
Sebi465g00027 867 ProSiteProfiles Leucine-rich repeat profile. 123 145 IPR001611 GO:0005515
Sebi465g00027 867 Gene3D Ribonuclease Inhibitor 31 181 IPR032675 -
Sebi465g00027 867 Pfam Leucine rich repeat 195 254 IPR001611 GO:0005515
Sebi465g00027 867 FunFam LRR receptor-like serine/threonine-protein kinase 215 290 - -
Sebi465g00027 867 FunFam Leucine-rich receptor-like protein kinase family protein 670 752 - -
Sebi465g00027 867 Pfam Protein tyrosine and serine/threonine kinase 752 844 IPR001245 GO:0004672|GO:0006468
Sebi465g00027 867 Pfam Protein tyrosine and serine/threonine kinase 683 748 IPR001245 GO:0004672|GO:0006468
Sebi465g00027 867 Gene3D Ribonuclease Inhibitor 334 473 IPR032675 -
Sebi465g00027 867 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Sebi465g00027 867 Gene3D Ribonuclease Inhibitor 474 595 IPR032675 -
Sebi465g00027 867 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 746 844 - -
Sebi465g00027 867 FunFam Receptor-like protein kinase HSL1 291 597 - -
Sebi465g00027 867 Gene3D Transferase(Phosphotransferase) domain 1 745 856 - -
Sebi465g00027 867 SMART LRR_typ_2 457 480 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 481 505 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 144 168 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 529 553 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 265 289 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 97 121 IPR003591 -
Sebi465g00027 867 SMART LRR_typ_2 217 241 IPR003591 -
Sebi465g00027 867 Gene3D Ribonuclease Inhibitor 182 333 IPR032675 -
Sebi465g00027 867 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Sebi465g00027 867 ProSitePatterns Protein kinases ATP-binding region signature. 686 709 IPR017441 GO:0005524
Sebi465g00027 867 SUPERFAMILY L domain-like 354 573 - -
Sebi465g00027 867 SUPERFAMILY Protein kinase-like (PK-like) 680 849 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi465g00027 Sebi-Chr465 764523 768046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi465g00027 746 855 Receptor kinase-like Gene Family AT1G72180 54.464 8.59e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi465g00027 PK_Tyr_Ser-Thr 1.2e-06 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi465g00027 - - gmx:100789704 1240.33