Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi464g00032 ATGGAGGAAGGAAAGCATAAATCTAGAAAAGAAGACTATGAGGTAAAAGAAGATACCAAAGATAAAGAGAGAAAACCTACCCGTGAAGAAGAGATGGAGGATGAACAAAGGAGGTTGGATGAAGAAATGGAAAAGCGGAGGAGGAGAGTTCAAGAGTGGCAAGAGCTAAGGAGGAAGAAGGAAGAAGCTGAAAGAGAGAAGCATGGTGAAGCAAGTGCTAATGAACCTGAGTCTGGAAAGACCTGGACACTTGAAGGGGAATCTGATGATGAAGAAGGAACAGGTACTGGGAAGCAAAATACAGCTATGGATGTAGATGGAGATGACAAACCTGCTGCTAAGGAACCTATGGAGTCGATGGCGGTAGATGTTGATAATGAAACAGTTGCATCTGATTTACAAAATGGAGCTGCTGGTGCTCCTGCAGATGAGGAAATAGATCCATTGGATGCTTTCATGAATTCTATGGTTCTACCTGAAGTTGAAAAGCTGAACAATGCTGTTACCTCATCACTTTCTGATAAAGCTGCAGACTTGAAACCCAAGGATAAAGGGGATGAACGAAGTAATGGTACACAGTCAAAGAAAGGTACAAATAAATCTATTGGCAGAATAATTCCTGGTGAAGAGTCTGACTCAGATTATGGAGATCTTGAAGCTGAGGGGGACCCATTAGATGAAGATGATGATGAATTCATGAAAAGAGTGAAAAAGACAAAAGCTGAGAAGCTTTCTATAGTTGATCACTCAAAGATTGATTACGAACCATTCAAGAAGAACTTTTATATTGAAGTGAAGGAGATCTCAAAGATGACTCCTGAAGAAGCTGCAGTATATAGGAAGCAGTTGGAGTTGAAGATACATGGAAAGGATGTGCCAAAGCCTGTAAAATCATGGCACCAAACTGGACTTACTAGCAAAATTTTGGAGACAATAAAGAAGCTGAACTTTGAAAAGCCAATGCCTATTCAAGCTCAGGCACTGCCTGTAATTATGAGTGGTCGAGATTGCATAGGCATTGCTAAAACTGGGTCAGGCAAAACACTTGCTTTTGTCCTGCCAATGTTGAGGCATATCAAAGATCAACCACCAGTTGTTGCAGGAGATGGTCCTATTGGGCTTATTATGGCCCCTACAAGAGAACTTGTTCAACAGATTCACAGTGATATAAAGAAGTTTACAAAGGTACTGGGTCTCAGGTGTGTGCCTGTCTATGGAGGTTCTGGTGTTGCTCAACAAATCAGTGAGTTGAAACGTGGTACTGAGATAGTGGTTTGTACTCCAGGTAGGATGATTGACATACTATGCACCAGCAGTGGAAAAATAACTAACCTGCGCAGAGTCACTTATCTGGTCATGGATGAGGCTGATCGAATGTTTGACATGGGCTTTGAACCTCAAATCACACGAATTGTTCAGAATATTCGACCAGATCGTCAAACGGTTCTCTTCTCTGCTACTTTTCCCCGTCAAGTTGAAATTCTGGCTCGTAAGGTTTTGAATAAACCTGTTGAAATACAAGTTGGTGGGAGGAGTGTTGTGAACAAAGATATAGCACAGCTAGTTGAGGTGAGGCCTGAAAATGAGAGGTTCCTTAGACTCTTGGAAATATTGGGAGAATGGTATGAGAAAGGAAAGATCTTAATATTTGTCCACTCACAGGAGAAGTGTGATGTTTTATTCAAGGATCTGCTCAGGCATGGTTATCCATGCCTTTCTCTTCACGGGGCTAAGGACCAGACAGACCGTGAATCCACAATTTCTGATTTTAAAAGCAATGTCTGCAATTTATTGGTTGCAACAAGTGTTGCTGCCAGGGGATTAGATGTCAAGGAGCTCGAATTGGTGATCAATTTTGATGTTCCAAACCACTACGAAGATTATGTACATCGTGTTGGGCGCACTGGCCGAGCTGGCCGAAAGGGTTGTGCCATTACATTTATTTCTGAGGAAGATGCAAGATATGCACCAGATCTGGTGAAAGCCTTGGAGCTATCTGAGCAGATTGTTCCTGATGATCTGAAAGCTCTTGCTGATAGCTTTATGGCAAAAGTGAATCAAGGACTGGAGCAAGCCCATGGGACTGGTTATGGAGGCAGTGGCTTTAAATTTAATGAAGAGGAAGATGAGGTGAGGAAAGCAGCAAAGAAAGCGCAAGCCAAAGAATATGGGTTTGAAGAAGACAAGTCAGATTCTGAAGATGAAGATGAAGGTATTAGGAAGGCAGGAGGTGATATCTCACAGCATCCTGCTCTTGCTCAGATTCTTGCTGCCACGAAAATGAACTCTACAGCAATGCCTACTCCTATCTCTGCTGCCCAGCTGATTTCAAATGGTGGACTACCTGTTTCTTTGCCAGCTGTTCTTGGTCTCCAGACGGCAACAGTCCTACCTGGGACAGGGCTACCCCTTGCTGCAAATGATGGGGCAGCTCGAGCAGCATTAGCTGCTATGAACCTGCAGCACAACTTGGCAAAAATACAATCCGAAGCATTGCCAGAGCATTATGAGGCTGAGTTGGAAATAAATGATTTCCCCCAGAATGCTAGGTGGAAAGTCACACACAAGGAAACTTTAGGCCCCATTTCGGAATGGACTGGAGCTGCCATTACCACTAGGGGGCAGTATTTCCCACCTGGCAAAATCCCAGGACCTGGGGAACGCAAACTCTACTTGTTCATTGAGGGTCCTAGTGAGCAGTCTGTTAAGAGAGCCAAAGCAGAATTGAAGCGTGTTTTGGAGGACATCACAAATCAAGCTTTGCAACTTCCTGGTGGAACTCAACCGGGCAAATACTCTGTTGTATAA 2808 0.4348 MEEGKHKSRKEDYEVKEDTKDKERKPTREEEMEDEQRRLDEEMEKRRRRVQEWQELRRKKEEAEREKHGEASANEPESGKTWTLEGESDDEEGTGTGKQNTAMDVDGDDKPAAKEPMESMAVDVDNETVASDLQNGAAGAPADEEIDPLDAFMNSMVLPEVEKLNNAVTSSLSDKAADLKPKDKGDERSNGTQSKKGTNKSIGRIIPGEESDSDYGDLEAEGDPLDEDDDEFMKRVKKTKAEKLSIVDHSKIDYEPFKKNFYIEVKEISKMTPEEAAVYRKQLELKIHGKDVPKPVKSWHQTGLTSKILETIKKLNFEKPMPIQAQALPVIMSGRDCIGIAKTGSGKTLAFVLPMLRHIKDQPPVVAGDGPIGLIMAPTRELVQQIHSDIKKFTKVLGLRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMIDILCTSSGKITNLRRVTYLVMDEADRMFDMGFEPQITRIVQNIRPDRQTVLFSATFPRQVEILARKVLNKPVEIQVGGRSVVNKDIAQLVEVRPENERFLRLLEILGEWYEKGKILIFVHSQEKCDVLFKDLLRHGYPCLSLHGAKDQTDRESTISDFKSNVCNLLVATSVAARGLDVKELELVINFDVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQIVPDDLKALADSFMAKVNQGLEQAHGTGYGGSGFKFNEEEDEVRKAAKKAQAKEYGFEEDKSDSEDEDEGIRKAGGDISQHPALAQILAATKMNSTAMPTPISAAQLISNGGLPVSLPAVLGLQTATVLPGTGLPLAANDGAARAALAAMNLQHNLAKIQSEALPEHYEAELEINDFPQNARWKVTHKETLGPISEWTGAAITTRGQYFPPGKIPGPGERKLYLFIEGPSEQSVKRAKAELKRVLEDITNQALQLPGGTQPGKYSVV 935
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi464g00032 935 Gene3D - 507 682 IPR027417 -
Sebi464g00032 935 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 297 325 IPR014014 GO:0003724
Sebi464g00032 935 MobiDBLite consensus disorder prediction 1 74 - -
Sebi464g00032 935 SMART ultradead3 316 521 IPR014001 -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 1 113 - -
Sebi464g00032 935 CDD DEADc_DDX46 286 507 - -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 713 744 - -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 212 228 - -
Sebi464g00032 935 FunFam probable ATP-dependent RNA helicase DDX17 259 509 - -
Sebi464g00032 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 444 679 IPR027417 -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 169 229 - -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 713 727 - -
Sebi464g00032 935 Coils Coil 29 66 - -
Sebi464g00032 935 Coils Coil 899 922 - -
Sebi464g00032 935 CDD SF2_C_DEAD 518 648 - -
Sebi464g00032 935 Pfam Helicase conserved C-terminal domain 531 639 IPR001650 -
Sebi464g00032 935 PANTHER RNA HELICASE 244 719 - -
Sebi464g00032 935 Gene3D - 249 506 IPR027417 -
Sebi464g00032 935 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 509 IPR027417 -
Sebi464g00032 935 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 534 678 IPR001650 -
Sebi464g00032 935 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 452 460 IPR000629 -
Sebi464g00032 935 SMART helicmild6 558 639 IPR001650 -
Sebi464g00032 935 MobiDBLite consensus disorder prediction 176 193 - -
Sebi464g00032 935 Pfam DEAD/DEAH box helicase 322 493 IPR011545 GO:0003676|GO:0005524
Sebi464g00032 935 CDD KH-I_AtRH42_like 833 934 - -
Sebi464g00032 935 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 328 506 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi464g00032 Sebi-Chr464 376414 379839 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi464g00032 284 659 Eukaryotic Initiation Factors Gene Family AT3G19760 32.632 8.04e-61 211