Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi464g00022 ATGAATGATCGCTTTCCAGATGCAACCCCTGAAGAGCTTAATGCAAGTGATGCAACCTGCATTATCTGTCGTGAAGAGATGACTTCAGCCAAGAAACTTTTATGTGGACACCTTTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCCCTACCTGCAGAGCCTTGGTTGTACCACCAGAAAATGGAACAAGTGTAGCTGGAGGGCAGCAAGGATCACAATCAGATGGTCATCGACAGGGAATTGGGACAGGCACTGGAAACACAGCTCAAACTGAGGTTGGCAGTGGGGTGGCAACTTATAGTTTGAGTCGGCATCAAGCCAGACTTCAAGCTGCTGCTGCTGCAGCTTCAATATATGAGAAGTCTTATGTTTATCCCTCGGCAACTTCTTTTGTATGCTCTCCCGGGTACAAACTCTATCCCCCGGCTCAAATATCTATGGCTGAGTCTACTAATACTGACCTTAATGGAGAACAAGCTTCCGGTGAACAAGCACAAAAGCAGTTTCTTATCCCTGGTGGACCAACAAATGTATCATTTCCTCCAATGGGACACTACCATTCTCTACCTTCCCGAACACATACAGTCCCTATGAATTATGGAGAGGGGTTTGGAAATGATCCAAATAACCAAAGCTCTCAGCTGGAAGCTCATAGAAAATTTTTACAATGGCAGATTGAGATTCTGCAAAATCAGTTCCAGAATATGCAGAGGACGAAGGCTGATAGAAACGTAGATGATGGCACATCATCATCAGCTAGCGGAAGCAGGCTTATCTCTTCCTCCTCATCTGTTTCTGGTCATGGTTACCATGAGGAGATTCAAGATGGAAAAGCATAA 855 0.4526 MNDRFPDATPEELNASDATCIICREEMTSAKKLLCGHLFHVHCLRSWLERQHTCPTCRALVVPPENGTSVAGGQQGSQSDGHRQGIGTGTGNTAQTEVGSGVATYSLSRHQARLQAAAAAASIYEKSYVYPSATSFVCSPGYKLYPPAQISMAESTNTDLNGEQASGEQAQKQFLIPGGPTNVSFPPMGHYHSLPSRTHTVPMNYGEGFGNDPNNQSSQLEAHRKFLQWQIEILQNQFQNMQRTKADRNVDDGTSSSASGSRLISSSSSVSGHGYHEEIQDGKA 284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi464g00022 284 CDD RING-H2_synoviolin 17 58 - -
Sebi464g00022 284 PANTHER RING ZINC FINGER PROTEIN 1 257 - -
Sebi464g00022 284 ProSiteProfiles Zinc finger RING-type profile. 20 58 IPR001841 -
Sebi464g00022 284 MobiDBLite consensus disorder prediction 244 284 - -
Sebi464g00022 284 SMART ring_2 20 57 IPR001841 -
Sebi464g00022 284 Pfam Ring finger domain 19 58 IPR001841 -
Sebi464g00022 284 SUPERFAMILY RING/U-box 2 64 - -
Sebi464g00022 284 MobiDBLite consensus disorder prediction 251 274 - -
Sebi464g00022 284 Coils Coil 224 244 - -
Sebi464g00022 284 MobiDBLite consensus disorder prediction 68 95 - -
Sebi464g00022 284 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 65 IPR013083 -
Sebi464g00022 284 MobiDBLite consensus disorder prediction 67 95 - -
Sebi464g00022 284 FunFam ERAD-associated E3 ubiquitin-protein ligase HRD1A 1 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi464g00022 Sebi-Chr464 266450 269887 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi464g00022 1 150 C3H Transcription Factor Family AT1G65040 64.238 6.27e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi464g00022 K10601 - gmx:100816441 408.683