Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi464g00018 ATGGCAACACCAGTAAATGATAACACTTTTCTTAGATTAAACCGTCTTGACATACATGGTGACGATGCTGGAACACAGGGCGCAGTTGCTAGCAAGAAGAAAAAGAGAGGCCAACGTGCTGTTGGAGGTGATAAGAGTGGGAGAGGGCTCCGCCAATTTAGTATGAAAGTGTGTGAAAAGGTAGAAAGCAAGGGAAGAACAACTTACAATGAGGTAGCAGATGAACTTGTGGCTGAATTTGCTGATCCAGGCAATAGTGTTTCATCGCCTGATCAGCAACAATATGATGAGAAAAACATTCGTCGAAGGGTGTATGATGCTTTGAATGTTCTCATGGCTATGGATATTATTTCTAAGGATAAAAAAGATATACAATGGAAGGGTCTTCCTCGCACTAGTCTGAATGATATTGAAGAACTAAAGGCAGAGCGTCTAGGGCTGAGGAATAGAATTGAAAAGAAAGCAGCCTATTTGCAAGAACTGGAGGACCAATACTTAGGTCTTCAGAACCTTATACAACGAAATGAGCAATTATATAGCTCAGGAAATGCTCCCAGTGGAGGGGTGTCTTTGCCTTTTATTCTAGTGCAGACACGCCCCCATGCAACTGTTGAAGTGGAAATATCAGAAGATATGCAGCTTGTGCATTTTGATTTCAATAGCACTCCCTTTGAGCTGCATGATGACAACTATGTTCTCAAGGCAATGAAATTCTGTGATAGACCTCAGAATGATAATGTAACACATAATCCTACAGATGGAGGTGAAGGTTCTAGCATGTCAGGCTTGTATCATGCTCAGGTTCCTACCTTAGTTTCAAACCCGCCAGTTAGGCCTCCCTCGTCCCCACCACTCCCTGGAATACTAAAGGCAAGAGTTAAGAATGAACACTGA 894 0.4251 MATPVNDNTFLRLNRLDIHGDDAGTQGAVASKKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFADPGNSVSSPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKDIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEDQYLGLQNLIQRNEQLYSSGNAPSGGVSLPFILVQTRPHATVEVEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQNDNVTHNPTDGGEGSSMSGLYHAQVPTLVSNPPVRPPSSPPLPGILKARVKNEH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi464g00018 297 Coils Coil 144 178 - -
Sebi464g00018 297 MobiDBLite consensus disorder prediction 21 47 - -
Sebi464g00018 297 Gene3D Transcription factor DP 134 256 IPR038168 -
Sebi464g00018 297 SMART E2F_TDP_2 45 128 IPR003316 GO:0005667|GO:0006355
Sebi464g00018 297 MobiDBLite consensus disorder prediction 243 297 - -
Sebi464g00018 297 Pfam Transcription factor DP 136 251 IPR014889 -
Sebi464g00018 297 Gene3D - 40 133 IPR036388 -
Sebi464g00018 297 SUPERFAMILY E2F-DP heterodimerization region 134 251 IPR037241 -
Sebi464g00018 297 CDD DP_DD 133 236 IPR014889 -
Sebi464g00018 297 FunFam Transcription factor-like protein DPB 134 258 - -
Sebi464g00018 297 MobiDBLite consensus disorder prediction 243 268 - -
Sebi464g00018 297 PANTHER TRANSCRIPTION FACTOR DP 6 251 IPR015648 GO:0005667|GO:0051726
Sebi464g00018 297 PIRSF Txn_factor_DP 1 297 IPR015648 GO:0005667|GO:0051726
Sebi464g00018 297 FunFam Transcription factor-like protein DPB 40 133 - -
Sebi464g00018 297 Pfam E2F/DP family winged-helix DNA-binding domain 48 128 IPR003316 GO:0005667|GO:0006355
Sebi464g00018 297 SUPERFAMILY "Winged helix" DNA-binding domain 48 129 IPR036390 -
Sebi464g00018 297 SMART DP_2 135 295 IPR014889 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi464g00018 Sebi-Chr464 223360 239510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi464g00018 34 244 E2F-DP Transcription Factor Family AT5G02470 52.830 5.19e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Sebi464g00018 DP 4.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi464g00018 K04683 - zju:107414839 526.168