Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi463g00071 ATGGCGGCATCGCGGCGGCTCCGGGAGCTGCAATCGCAACCGGGGAACAAGATCTGCGTCGATTGCTCCCAGAAGAACCCGCAATGGGCGTCGGTGTCGTACGGCGTCTTCATGTGCCTCGAGTGCTCCGGCAAGCACCGTGGCCTCGGCGTCCACATCTCCTTCGTCCGATCCGTCACCATGGATTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGAGGCAATGATAACCTCAATGCCTTCCTCGCTCGCTATTCAATTCCCAAGGAAACCGACATCGTCACCAAGTACAACACCAACGCCGCCGCCGTTTACCGTGACCGGATCCAGGCCATCGCCGAGGGACGTCCCTGGCGCGATCCGCCTGTCGTCAAGGAGAATCTATCCTCCGCCGGCAAGGGGAAGCCGCCGCTGACGCAGACTCGCCGGAATAATGATTCCGGCTGGGACGATTGGGGTAATGATGGCGGTGTCGATATCAGGAGCAAGTCGACCGGGGACTTCAGGAACTTGAACGGTGGCAACGGCGGAGCGCCGGCGAGGTCGAGGTCGACGGAGGATATATATACGCGGTCACAGCTGGAGGCTTCCGCGGCGAACAAGGAGAGCTTCTTCGCGAGGAAGATGGTGGAGAATGAGTCGCGACCCGAAGGGGTTCCGCCGTCACAGGGTGGGAAGTACGTTGGATTCGGATCGAGCCCCGCGCCTTCGCAGAGGAGCAATCCGCAAAACAACTATTTCTCTGTCGTTTCTCAGGGGATTGGTAAATTGTCATTGGTTGCTGCCTCTGCGGCTCATTCTGCTGCTAATGTTGTTCAGGCTGGCACAAAAGATATCACTTCTAAGTCACTGATGTTAATGCTTACTGCTTATTGCTTTGGAAAGGAACTTCCTGAACTCCCCAATTTTAGGGATAACTGGCTTTCACTTGTCTTTTTTGAGGATGAGGTCAAGGAAGGTGGTTATGATCAAAAGGTCAATGAAACTGTCAATGTTGTCACTCAAAAGACATCAGAGATTGGACAAAGGACATGGGGTATAATGAAAGGTGTCATGGCTTTGGCTTCACAGAAGGTTGAAGAGTACACCCGAGATAACCCAAATTGGAAGGCGGATAACTGGCAACAGAACGAGAATGGTAGAAATGGTTACTATCAGGATTTCAATCAAGAGAACAAAGGCTGGAATTCTTCTACCGGAAGAGAACAATCTTCATCAGGGCAATTTAAAACTCATACCTCAAGCTCTTGGGACGATTGGGACCAGAAAGATAGTAGGAAAGAGGAACCAACTAAAGGATCAACTCATTCATCTGCTGGGCAGTTTGGTACTTACAATTCAAGCTCTTGGGATGATTGGGACCACAAAGATTCTAGGAAGGAAGAACCACCTAAAGGATCGGCTCCCCATAATAATGATGGTGGTTGGGCTGGCTGGGATAATGCCAAAGAAGATGGATTTGATAATTTTTATGAAGGTGCATCTAACAAGAAAGCTGTTGGTCATAATGGAAAATCAGATGCCTCTTGGACAGGGGGAGGCTTTCTCTAA 1557 0.5093 MAASRRLRELQSQPGNKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDNLNAFLARYSIPKETDIVTKYNTNAAAVYRDRIQAIAEGRPWRDPPVVKENLSSAGKGKPPLTQTRRNNDSGWDDWGNDGGVDIRSKSTGDFRNLNGGNGGAPARSRSTEDIYTRSQLEASAANKESFFARKMVENESRPEGVPPSQGGKYVGFGSSPAPSQRSNPQNNYFSVVSQGIGKLSLVAASAAHSAANVVQAGTKDITSKSLMLMLTAYCFGKELPELPNFRDNWLSLVFFEDEVKEGGYDQKVNETVNVVTQKTSEIGQRTWGIMKGVMALASQKVEEYTRDNPNWKADNWQQNENGRNGYYQDFNQENKGWNSSTGREQSSSGQFKTHTSSSWDDWDQKDSRKEEPTKGSTHSSAGQFGTYNSSSWDDWDHKDSRKEEPPKGSAPHNNDGGWAGWDNAKEDGFDNFYEGASNKKAVGHNGKSDASWTGGGFL 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi463g00071 518 SMART arf_gap_3 4 120 IPR001164 GO:0005096
Sebi463g00071 518 MobiDBLite consensus disorder prediction 368 518 - -
Sebi463g00071 518 MobiDBLite consensus disorder prediction 452 469 - -
Sebi463g00071 518 MobiDBLite consensus disorder prediction 213 246 - -
Sebi463g00071 518 Gene3D Arf GTPase activating protein 1 128 IPR038508 -
Sebi463g00071 518 Pfam Putative GTPase activating protein for Arf 5 107 IPR001164 GO:0005096
Sebi463g00071 518 MobiDBLite consensus disorder prediction 370 417 - -
Sebi463g00071 518 SUPERFAMILY ArfGap/RecO-like zinc finger 5 114 IPR037278 -
Sebi463g00071 518 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Sebi463g00071 518 MobiDBLite consensus disorder prediction 418 435 - -
Sebi463g00071 518 CDD ArfGap_ArfGap1 3 117 - -
Sebi463g00071 518 FunFam ADP-ribosylation factor GTPase-activating protein 1 129 - -
Sebi463g00071 518 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 436 517 IPR044519 GO:0005096|GO:0016192
Sebi463g00071 518 MobiDBLite consensus disorder prediction 135 149 - -
Sebi463g00071 518 MobiDBLite consensus disorder prediction 436 451 - -
Sebi463g00071 518 MobiDBLite consensus disorder prediction 122 187 - -
Sebi463g00071 518 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Sebi463g00071 518 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Sebi463g00071 518 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi463g00071 Sebi-Chr463 781150 784202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi463g00071 5 83 C2H2 Transcription Factor Family AT4G05330 51.250 2.16e-22 96.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi463g00071 K12492 - gmx:100806519 808.135