Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi463g00057 ATGACTGGTGTTTACGACCCTGTGAGCAGCGTTTTCCCTGGCAGACAAAATTGGAGACTGAAAGTGAGAGTTGTGAGGGTGTGGGATATGTTTCCCATTGATGAACCATCTAGAACATTTTCTGTTGAAATGGTACTGGTTGATCAAATGGGAACCAGAATTCAAGCATCTATTCGCAAACCAATGATGAGGAGGTTCAGTGGTTCCGTTATCGAAGGAGAGGCATACAAGATGCATTATTTCGGTGTTGTTCGCAACCTGGGTTCATACCGATCAACAAAGCATGAGTTTAAGTTGGTTTTTCATCCGAGAACAAGAATAATGAGGTGTGATGTCGGTAACATTTCCTTGCATGGGCTTTCTCCCATGAATACTCAAGAGATAATGAGCACTAATGGTCGTAGCGACTATCTTGTGGATACGATTGGAGTCATGACTGCTGTGTCTGCTGAAAAACGTTCATTCCGTGATGGTCGCATGACTAGGGTGATGCAGATGGAGCTAACTGATGACAAGGGGAAGATTCAATGTGCTATGTTTGGCAACTATGATATGGTGGGGGATTTATTGCATGGGATTGGCAACGAATTGCCTGTTGTAGTGGTTATGTTTGCGAAGGTGAAGATGTACAAAGGTGAGGTGGTTTTGCAGAATGTTTTAAACACCACCAAAATACTCTGCAATCCTAACATTCCTGAAGTAGAGACTTTCCGTGATGGACTCACTATCCATGATATAGATATACTAGCACCAATGGGTGTTATACAGGAAGACCATCAAAGCATTCCCCTGAAGGAAGAGTTCCTTGCATCCCATCCTAGGAAAACGATCAAACAGCTTCATAACACTGAAGAGGATGGATTGTTCATTGTTTTGGCTTCGATAGTCACTGTCATTGGCAATGCTAACTGGTGGTATGCGGCCTGCAAATGCCATCGAGCTGTGACAATGGATGGTGACTCTTATTACTGCTCAGCATGTGGCATGCATGTGCAAGAAGTCTCTTCTAGGTTCAAGTTGAAACTTGAGGTATATGATGGCGAAGATACTGCTGCTTTCGTGCTTTTTGATTCAGATTCTGAGATGTTACTTGGTCGCAGTTGTGCTGCCATGTTATCTGACTTGAAGGATAATCCTCCTGATGACGTTTCATACCTTTTTGACGACATTGCTGGAAAAGAAGTTTTATTCAAAGTTGAGAAACCGTCTGACTATGCTTTCAAATTTGATGACTCTTTCCGAGTGAAGAAAATTTGTTGTGATACCTCTGTTATCAACGAATTCAAGGATGAAAATGCTGTCGTTACACCGGATGCTAGAGTTTTACGTGTTCCATTTCCTAACTTGGATGATATTCCTCAGGATGATGGTGGTAGAGGCGCAATACCTGGAGAAGAGTCTAAAGATACGTGTGTTGAACTGAATCCAGTTTCTTTAGATGAGGTGGTAAGTCCATCGGCAAAATGTTATGGAACCAATGAATCTGGGACAAGTAATGCTGCAAAGGAACGTGTCAAAGGGAAGAAAAAGCTGAAGCTCAAGGAAGCGGTTGTTTAG 1557 0.4252 MTGVYDPVSSVFPGRQNWRLKVRVVRVWDMFPIDEPSRTFSVEMVLVDQMGTRIQASIRKPMMRRFSGSVIEGEAYKMHYFGVVRNLGSYRSTKHEFKLVFHPRTRIMRCDVGNISLHGLSPMNTQEIMSTNGRSDYLVDTIGVMTAVSAEKRSFRDGRMTRVMQMELTDDKGKIQCAMFGNYDMVGDLLHGIGNELPVVVVMFAKVKMYKGEVVLQNVLNTTKILCNPNIPEVETFRDGLTIHDIDILAPMGVIQEDHQSIPLKEEFLASHPRKTIKQLHNTEEDGLFIVLASIVTVIGNANWWYAACKCHRAVTMDGDSYYCSACGMHVQEVSSRFKLKLEVYDGEDTAAFVLFDSDSEMLLGRSCAAMLSDLKDNPPDDVSYLFDDIAGKEVLFKVEKPSDYAFKFDDSFRVKKICCDTSVINEFKDENAVVTPDARVLRVPFPNLDDIPQDDGGRGAIPGEESKDTCVELNPVSLDEVVSPSAKCYGTNESGTSNAAKERVKGKKKLKLKEAVV 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi463g00057 518 CDD RPA1_DBD_C 275 399 IPR047192 -
Sebi463g00057 518 Pfam Domain of unknown function DUF223 43 112 IPR003871 -
Sebi463g00057 518 SUPERFAMILY Nucleic acid-binding proteins 126 242 IPR012340 -
Sebi463g00057 518 SUPERFAMILY Nucleic acid-binding proteins 272 426 IPR012340 -
Sebi463g00057 518 SUPERFAMILY Nucleic acid-binding proteins 5 111 IPR012340 -
Sebi463g00057 518 CDD RPA1_DBD_A_like 19 107 - -
Sebi463g00057 518 Pfam Replication factor-A C terminal domain 290 420 IPR013955 -
Sebi463g00057 518 CDD RPA1_DBD_B_like 140 238 - -
Sebi463g00057 518 Gene3D - 122 243 IPR012340 -
Sebi463g00057 518 Gene3D - 6 111 IPR012340 -
Sebi463g00057 518 Gene3D - 267 429 IPR012340 -
Sebi463g00057 518 PANTHER OS03G0429900 PROTEIN 7 382 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi463g00057 Sebi-Chr463 631125 633552 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi463g00057 1 370 Core DNA Replication Machinery Family AT5G61000 24.257 3.17e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi463g00057 - - lja:Lj6g3v0884310.1 417.157