Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi463g00046 ATGAAGAGACAGAGAGAAACACAAGACTCTGAAAATACAACAAATTGTTTAATCATAACCGATACAAGTGCATCCATATTTGAGTGCAAGACATGCAACCGCAAATTCTTGTCATTTCAAGCACTGGGTGGCCACAGGGCTAGCCACAACCACAAGAGGCACAAGGTGGATGGGGCAGAACAACTGAGAGCAGGGGCCAAATCTCTCACCAAAATGTACAATTGCTCCATTTGTGGTCAAGAATTCTCTCTTGGCCAGGCTCTTGGAGGCCACATGAGAAGGCACACAGCTGCAACCAACCAACTGTTTTCTTCCATAAACAAGGTTGTTGCAAAAGTTTCACTCCTAAAGAGATCGTCATCATGTGATAGTGATACCAAGCATTTCAGCTTCGACCTCAACTTAACACCACTTGAGAATGACTTCAAGTTATTGTTGTTCGGCAATGTGACATCTAATATTAATCTTTCTTCCTTTTAA 480 0.4229 MKRQRETQDSENTTNCLIITDTSASIFECKTCNRKFLSFQALGGHRASHNHKRHKVDGAEQLRAGAKSLTKMYNCSICGQEFSLGQALGGHMRRHTAATNQLFSSINKVVAKVSLLKRSSSCDSDTKHFSFDLNLTPLENDFKLLLFGNVTSNINLSSF 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi463g00046 159 PANTHER ZINC FINGER PROTEIN ZAT5 12 140 - -
Sebi463g00046 159 SUPERFAMILY beta-beta-alpha zinc fingers 23 54 IPR036236 -
Sebi463g00046 159 SMART c2h2final6 27 49 IPR013087 -
Sebi463g00046 159 SMART c2h2final6 73 95 IPR013087 -
Sebi463g00046 159 SUPERFAMILY beta-beta-alpha zinc fingers 71 98 IPR036236 -
Sebi463g00046 159 ProSitePatterns Zinc finger C2H2 type domain signature. 29 51 IPR013087 -
Sebi463g00046 159 Pfam C2H2-type zinc finger 73 96 - -
Sebi463g00046 159 Pfam C2H2-type zinc finger 27 49 - -
Sebi463g00046 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 100 IPR013087 -
Sebi463g00046 159 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Sebi463g00046 159 Gene3D Classic Zinc Finger 25 95 - -
Sebi463g00046 159 ProSiteProfiles Zinc finger C2H2 type domain profile. 27 54 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi463g00046 Sebi-Chr463 482966 483445 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi463g00046 1 156 C2H2 Transcription Factor Family AT2G37430 37.363 4.16e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi463g00046 zf-C2H2_6 1.8e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi463g00046 - - gmx:100793782 180.644