Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi463g00034 ATGAACTCTTTGCCGTACGCCCACGTCGACTCCACTCTCCGTGCCCTCGCCACACAGGCCGAGGGCTTTGGTCGCTTCGCAATCGGTGGACTTCACGGCCCCCTTTATCATGTCACCTCTCTCGCAGATGATGGACCAGGATCATTGCGTGACGCATGTCGCAGAAAAGAACCTTTATGGATTGTATTTGAGGTTTCAGGTACTATTCATCTTTCGTCGTATTTGAGTGTGTCGTCATACAAGACCATTGATGGAAGGGGCCAAAGGATTAAGCTCACTGGAAAGGGTTTGCGGCTGAAGGAGTGTGAGCATGTGATAATTTGCAATTTAGTGTTAGAAGGAGGAAGAGGGCCTGATGTTGATGGCATTCAGATCAAACCTAATTCAAAGCACATATGGATAGACCGTTGCAGTCTAAGTGATTTTGATGATGGCTTGATAGATATCACTAGAGAAAGCACTGATATCACTATTTCAAGGTGTCACTTTGCTCAGCATGACAAAACAATGCTCATTGGGGCAGATCCTTCACACGTTGGTGATAGATGCATCAGAGTCACCATACACCATTGTTTTTTTAATGGGACTAGACAGAGGCATCCTCGTGTTAGATTTGGAAAAGTACATCTGTACAATAATTACACCAGAAACTGGGGCATATATGCTGTTTGTGCAAGTGTGGAATCCCAGATATTCTCGCAACATAATATCTATGAAGCAGGCCAGAAGAAGGTGGCATTTAAGTATCTTACTGAGAAGGCAGCAGACAAGGGAGCAGAAGCAAGTGGTCACATAAGGTCTGAAGGAGACTTGTTTTTGAATGGTGCTCAACCAGGATTAATGACTGCAGAGGGTGTTGGGTGTAACATGTTTCACCCCAGTGATTACTATCCCACTTGGACTGTGGAACCTCCTACAGATGAGCTAAAACAGGTTCTTCATCACTGCACTGGATGGCAATCTGTTGCGAGGCCAGCAGATCAAACAGTTTGCGCAGAATAG 1002 0.4541 MNSLPYAHVDSTLRALATQAEGFGRFAIGGLHGPLYHVTSLADDGPGSLRDACRRKEPLWIVFEVSGTIHLSSYLSVSSYKTIDGRGQRIKLTGKGLRLKECEHVIICNLVLEGGRGPDVDGIQIKPNSKHIWIDRCSLSDFDDGLIDITRESTDITISRCHFAQHDKTMLIGADPSHVGDRCIRVTIHHCFFNGTRQRHPRVRFGKVHLYNNYTRNWGIYAVCASVESQIFSQHNIYEAGQKKVAFKYLTEKAADKGAEASGHIRSEGDLFLNGAQPGLMTAEGVGCNMFHPSDYYPTWTVEPPTDELKQVLHHCTGWQSVARPADQTVCAE 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi463g00034 333 SUPERFAMILY Pectin lyase-like 18 325 IPR011050 -
Sebi463g00034 333 PANTHER PECTATE LYASE 18-RELATED 9 277 IPR045032 GO:0030570
Sebi463g00034 333 SMART amb_all 46 244 IPR002022 -
Sebi463g00034 333 Pfam Pectate lyase 75 237 IPR002022 -
Sebi463g00034 333 Gene3D - 6 303 IPR012334 -
Sebi463g00034 333 PRINTS Pollen allergen Amb family signature 199 218 IPR018082 -
Sebi463g00034 333 PRINTS Pollen allergen Amb family signature 221 240 IPR018082 -
Sebi463g00034 333 PRINTS Pollen allergen Amb family signature 19 36 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi463g00034 Sebi-Chr463 377733 380191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi463g00034 41 330 Polysaccharide Lyase AT3G55140 77.931 2.55e-174 484
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi463g00034 K01728 - gmx:100814368 608.216