Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi463g00003 ATGTCGCCACGTGTTCCACTCCAAATCTTCAAGATTTTCTCCGTTACCATATCCGCCCTTGAGCACCCGGCTTTTGATTTCATCCACATCAGCAAGGCCCTCTCTCTAAACCCGATGCCAACATGGAAATATCTTCCTCCCACGTGGCATTTCGCGAACATTCCACACCTCCATTTCGTCCACGTCATCAATCTCGGTCCTCGCAGTCCGCACCCACCCGATATCTTTCTCCTCTTCCCTAAACTAACGTCGGCGTTATCTGCTTCCTCACCGTACCTTCAGATTGCTCTGACGTTTCTTCTTCGCATGCATAACCGTTTTGGATTTTCAATGAGTGTTGATGGTGACAGCAAAGAGCTGAAAGAACTGAATCAGCGCTTACGGGATGAGAAAAAGACCTTTAAAAAAGGAGTTTCTGGTGAAGATAATGAAGTGAAATGTAATGGAGCAGCTGAAGAAGTTAAGGTTGGACAGGGGGGGAATGTGGAATCCTCTTCTGTCCAGCAGCATATACCACAGCAACAGCCTCAAGGGGCAATGATTTGTTGGGAGAGGTTTTTACATATTAGATCCCTTAAGGTCTTGCTTGTGGAGAATGATTACTCTACCCGCCATGTCGTCACTGCACTGCTTCGCAATTGTAGCTATGAAGTTATTGAAGCAGCAAATGGATTGCAAGCTTGGAAGATATTGGAGGATTTAACCAATCATATTGATCTTGTTTTAACTGAGGTAGCAATGCCTGGCTTATCTGGCATTGGTCTTCTATACAAGATTATGAGCCACAAAACAAGGAAAAATATTCCAGTAATTATGATGTCATCTCTTGACTCTATGGGTTTAGTCTTTAAGTGTTTGTCAAAGGGTGCTGTTGACTTTCTAGTTAAACCCATACGGAAGAATGAGCTTAAAAACCTGTGGCAGCATGTTTGGAGGAGATGTCATAGTTCTAGTGGGAGTGGCAGCGAAAGTGGCACACAAACCCAGAAGTCTGTAAAATCGAAGAGTCTTGAGAAGTCTGATAATAATTCTGGAAGCAATGATGGGGATGACAATGGAAGTATAGGCTTAAATAATGGGGATGGAAGTGACAATGGTAGTGGCACTCAGAGTTCCTGGACCAAACGAGCTGTAGAAGTTGACAGTCCCAAACCAGTCTCCCAGTGGGATCAAATAACCGAGTGCCCTGATAGCACTTGTGCTCAAGTTGTTCACTCCAATGCTGAAATATGTGGGAACAAGGTGGTTCCTGTGGCCACAAAGGAGTGTCAAGAACAGAAGGAACAAATTGGTTCGAAACATGGCAACACACTTGATGTAGGCCCCTCTAAATTCAATGAGCAAATTAATAGAGGACAACTGGATCTTAATTGTGAGAATCAATCTAGCAAGCTAAGGTGCAAAGGTCTTTCATTGTCTGATGCTATTACTAGCACTTCTGATTCTCAGATGCATAGTGGAGAATTTGAAGCCCTAAATAGAAGACCCAAGTCCTCAGATATTGAAAATAAAGATGCTGGTATTACAATTCAGGATGAACGGAATGTTTTGAGACGTTCCGATCAATCTGCTTTCTCAAGATACAATGCAGCCTCTAATACTAAGAAGTCTCCCACTGGATGTGTTGGAAGCAATTCTCCACATAATACTAGCTTAGAAGTCACAAAGAAAGATTCATCTCGTGACATTCAATCTCATTCTAGTGGCAATCCTCCTAACCAGAACTCAAATGACGCTAGCAATAACATTGATATGGGTTCCACTACTAATAATGCTTTTACTAAATCTACTGTTATAAGTGAGCCAGCAGTGGCATCAACAACTAAATGTTTGTACCAAACATCTGCTTTCCAGCCTGTAAAGAACAACCATCTGTGTACCTCTCAACAAGTTGTCTTACATAATACTGAAGATACAACAACAATGCTGGCACCACCTAAAGTAGACACTCTTAAGGATTCTGCGACTCAGGACTTCCATTGCCATTATGAAACCATAACTGTAATATTGGAAATTGCAGTGTCAATAGAAGTGCCTCAGGTAGCAACAATGGAAGCAATGGACAAAATGGTAGCAGCACAGCAGTTAATGCTGGAGGGACAAACATAG 2109 0.4244 MSPRVPLQIFKIFSVTISALEHPAFDFIHISKALSLNPMPTWKYLPPTWHFANIPHLHFVHVINLGPRSPHPPDIFLLFPKLTSALSASSPYLQIALTFLLRMHNRFGFSMSVDGDSKELKELNQRLRDEKKTFKKGVSGEDNEVKCNGAAEEVKVGQGGNVESSSVQQHIPQQQPQGAMICWERFLHIRSLKVLLVENDYSTRHVVTALLRNCSYEVIEAANGLQAWKILEDLTNHIDLVLTEVAMPGLSGIGLLYKIMSHKTRKNIPVIMMSSLDSMGLVFKCLSKGAVDFLVKPIRKNELKNLWQHVWRRCHSSSGSGSESGTQTQKSVKSKSLEKSDNNSGSNDGDDNGSIGLNNGDGSDNGSGTQSSWTKRAVEVDSPKPVSQWDQITECPDSTCAQVVHSNAEICGNKVVPVATKECQEQKEQIGSKHGNTLDVGPSKFNEQINRGQLDLNCENQSSKLRCKGLSLSDAITSTSDSQMHSGEFEALNRRPKSSDIENKDAGITIQDERNVLRRSDQSAFSRYNAASNTKKSPTGCVGSNSPHNTSLEVTKKDSSRDIQSHSSGNPPNQNSNDASNNIDMGSTTNNAFTKSTVISEPAVASTTKCLYQTSAFQPVKNNHLCTSQQVVLHNTEDTTTMLAPPKVDTLKDSATQDFHCHYETITVILEIAVSIEVPQVATMEAMDKMVAAQQLMLEGQT 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi463g00003 702 Coils Coil 113 133 - -
Sebi463g00003 702 PANTHER TWO-COMPONENT RESPONSE REGULATOR 192 478 IPR045279 GO:0009736
Sebi463g00003 702 CDD psREC_PRR 194 297 - -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 316 377 - -
Sebi463g00003 702 Gene3D - 191 345 - -
Sebi463g00003 702 FunFam Two-component response regulator-like PRR37 192 350 - -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 564 588 - -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 521 553 - -
Sebi463g00003 702 Pfam Response regulator receiver domain 194 305 IPR001789 GO:0000160
Sebi463g00003 702 SUPERFAMILY CheY-like 190 316 IPR011006 -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 488 520 - -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 316 390 - -
Sebi463g00003 702 MobiDBLite consensus disorder prediction 478 588 - -
Sebi463g00003 702 ProSiteProfiles Response regulatory domain profile. 193 311 IPR001789 GO:0000160
Sebi463g00003 702 SMART REC_2 192 307 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi463g00003 Sebi-Chr463 24190 34892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi463g00003 164 539 Response Regulator Gene Family AT5G60100 50.769 1.75e-91 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi463g00003 Response_reg 9.2e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi463g00003 K12129 - gmx:100806454 877.47