LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi462g00061	ATGAAACCCCTGCTTCAGTACCCTTGTTCCATTTTAATTTTCTCGGTTATTACACTTGTGATCTCAATCAATATTCCAACATCTCTTGGTGAGGATGATAGCTACTACTACACCAACTGCAATACTGCTTTTACCTGCGAAGGCAGCAATATCAAAACTCTCAAGTATCCATTCTTTGGAGGAAACAGAGATTGGTATTGCGGTCAACCTGGCTTGGATCTCATATGCGAAGACAGTGCCCCCAAGATGACCATCAATTCCATCAAATACCGTATTCTTGATTGGGACAGCACAACACAGAAGCTCAAAGTCGCTAGGGACGATTATTACTCGAGTAGTGTCTGTTCTGTGAGTGATTACAAGAACACCACATTTGATAACACATTGTTTGAGATTCAATATGATGGTGGGTTTGTTACGCTGTTATACAGTTGCACTTCAACAGAAAACTTCCAGAATCAGAATCCGTATCGTAGTGACTGCGGTGAAAGTAAAACTGTATACTACGTTCTAGAACCTTTGTATTCTCCCCTTTGTAGTGCGAGTATTGTGATTCCCATTTTGGGACAGCAAGTTTCATCACTTGCATCTTCTCCCAATAGAATAGACGATGCATTAAAGCAAGGTTTTGAGCTGAGATGGACGGGAGATTATAGGAAGTGCACGGCATGTATTGAATCTGGTGGAGAGTGTGGCTACTATGATGGAGCATTCAGATGTTTATGCAAAATTGGAACTCATACATCTTCATGTACTTCAGAAATGGCCTCACCTCCAAGCATCTTTTTCCCATTCTTGATCACAACCATCATCCTAAATCAAATCCCCAAATCATCTTCTGCTGATAATGTGCAGTATCTAAAATGCAGTTCTTCATTTAATTGTGCAAATCTTAAAAACCTGAGCTATCCTTTCTGGGGGTCTACTAGACCCCAATACTGTGGCCACCCTGCATTTAAGCTAGAATGCACTGGTGAAGTAGCAAGGGTTACCATTATGTCAGAGAGTTACAGAGTTCTTGAAGTCAGTGATTCTAATCATGAACTCAAAGTTGTAAGAAATGACTACTGGAATAATATTTGTCCCACAACCCTCAAGAACACCACTTTAGGTTGCAGTTTATTTGATTATGGTTCAGATTCTCAGAACCTGACTCTCTACTATGATTGTCCTTCCCCTACTTTTCCTCTACCAGATAGCTTTTCCCCTCAGTTTAATTGCAGTATAAATGGAACTCAAATGCTTAACTATTTTGTGATGGAGAGCATCCTAGAAAATGCTGAGACTTCGGTCTCATTGAGTGAAATAATGGGAACATGCAAATCTAGAGTCATTGTTCCAATTTTGGAGTCAGAAGCTAAAGTGATAGAGACAAATTCAACCGTGGAAAATCTGAAGGCTGCTCTTGATAATGGTTTTGGCTTGGAGTGGAATGCAAACAATAGTTTGTGTGATGAATGCCAAAACTCTGGTGGTCATTGTGGTTATGACCCAAGCTCAAGGGAATTCACTTGCTATTGCAAGGATGGAACTTTTCCATCTTCATGTAGATCAGGTGAGTACCAGCTGTATTGCCACAACACTACCTTCAACTGCGGCACCATAACCAACCTTTCCTACCCTTTCACCGGCGGTGACCGCCCCTTCTTTTGTGGGCCACCACAGTTCCACTTAACCTGCAACAACGGTGTTCCCGAGTTGAACATCTCGTCAGTGAGTTACCGAGTTCTTCAAATCAACTCAGTAACTCGCACCCTCACCTTAGCAAGATTAGACCTTTGGAACAACACATGTACCCATAACTACGTTAACTCAACTTTCGATGAGACCATCTTTAGCTATGGTTCAGGCAACCGGAACCTCACCTTGTTCTATGGTTGCAAAGCCACTACTCAATTGACCAGTACGCCAGATAATTTGTTTCACTGCGAGATTAATGGGAATAAGAGTGATTCTTATTCTTTAGTTGGTCCATTTCCTTTGAACCCTGTTCTTAGCATTGTTACATGTGATGATAATGTTGGGGTGGCAATTCTGGAAGAGCAGGTTGATAGGCTTGTAAAGAACCGTTCTTTGCTTAGGGAGATTTTGATGAAGGGATTTAATGTGAATTATAGCAATCCTTATGACAATGAATGCTCTGAGTGTCTTGGTTCTGGTGGCCAGTGTGGTTTTGATTCTGATAACAATGAACCAATTTGTGTTTGTGGGGATCGGTTATGTACATCTCCAGGATCATCTTTAAAAAGGAACTGGCGGCTTAAGATTGTGATAGGTGAAGGAGGATATGGTGTTGTCTACAAAGCAAGATTATCTGATGGTCGTCCTGTTGCCGTTAAAGTAATAAGTGATTCTAAGGGAAATGGAGAAGAATTCATAAATGAAGTTGCTAGCATTAGTAGAACTTCTCATGTGAACATTGTCTCACTTTTGGGATTCTGTTATGATATGAACAAAAGAGTACTAATCTATGAATTCATGCCCAATGGTTCATTAGATAATTTCATCAATAAAACAGGATCTCCAAATGTGATTTGTCATTTTGATTGCAGCATGTTGTATAAAGTTGCACTTGGGGTTGCTCGAGGACTAGAATACTTACATCGAGGGTGCAATACAAGGATTTTACACCTTGATATTAAACCTCAAAATATTCTTTTGGATGAAGATTTTTGTCCAAAAATATCTGATTTTGGACTTGCTAAAATATGCCAAAAGAAGGAGAGCATTGTGTCTATATTGGGCACAAGAGGAACTCCAGGGTACATTGCACCAGAAGTATTTAGTCGAGCATTTGGTGGTGTTTCTCACAAATCTGATGTGTATAGCTATGGTATGTTGATTCTTGAAATGGTTGGAGGAAGAAAGAATTATGATAATGGAGGATCACATACTAGTGAAATGTATTTTCCAGATTGGATATATAATGATCTTGAGCAAGGTAACATTCACACAAATTATTTGGCCATCACAGAGGAGGAAAATGAGATGGTAAGAAAGATAACCTTGGTGAGTCTATGGTGCATTCAAACAAATCCATCAGATAGGCCATCAATGAGTAAAGTAGTGGAGATGTTAGAAGGACCACTTCAGCAAGTTCCATATCCTCCAAAGCCTATCTTATATTCTCTTGAAAGGAGCCCATTACAAATTTCAGATATATCTTCAGACAATATGCAAGAGACAAATCCAATAACAACACAAAAGGATGGTTCTATGGAATTTAATGAGTAA	3234	0.3967	MKPLLQYPCSILIFSVITLVISINIPTSLGEDDSYYYTNCNTAFTCEGSNIKTLKYPFFGGNRDWYCGQPGLDLICEDSAPKMTINSIKYRILDWDSTTQKLKVARDDYYSSSVCSVSDYKNTTFDNTLFEIQYDGGFVTLLYSCTSTENFQNQNPYRSDCGESKTVYYVLEPLYSPLCSASIVIPILGQQVSSLASSPNRIDDALKQGFELRWTGDYRKCTACIESGGECGYYDGAFRCLCKIGTHTSSCTSEMASPPSIFFPFLITTIILNQIPKSSSADNVQYLKCSSSFNCANLKNLSYPFWGSTRPQYCGHPAFKLECTGEVARVTIMSESYRVLEVSDSNHELKVVRNDYWNNICPTTLKNTTLGCSLFDYGSDSQNLTLYYDCPSPTFPLPDSFSPQFNCSINGTQMLNYFVMESILENAETSVSLSEIMGTCKSRVIVPILESEAKVIETNSTVENLKAALDNGFGLEWNANNSLCDECQNSGGHCGYDPSSREFTCYCKDGTFPSSCRSGEYQLYCHNTTFNCGTITNLSYPFTGGDRPFFCGPPQFHLTCNNGVPELNISSVSYRVLQINSVTRTLTLARLDLWNNTCTHNYVNSTFDETIFSYGSGNRNLTLFYGCKATTQLTSTPDNLFHCEINGNKSDSYSLVGPFPLNPVLSIVTCDDNVGVAILEEQVDRLVKNRSLLREILMKGFNVNYSNPYDNECSECLGSGGQCGFDSDNNEPICVCGDRLCTSPGSSLKRNWRLKIVIGEGGYGVVYKARLSDGRPVAVKVISDSKGNGEEFINEVASISRTSHVNIVSLLGFCYDMNKRVLIYEFMPNGSLDNFINKTGSPNVICHFDCSMLYKVALGVARGLEYLHRGCNTRILHLDIKPQNILLDEDFCPKISDFGLAKICQKKESIVSILGTRGTPGYIAPEVFSRAFGGVSHKSDVYSYGMLILEMVGGRKNYDNGGSHTSEMYFPDWIYNDLEQGNIHTNYLAITEEENEMVRKITLVSLWCIQTNPSDRPSMSKVVEMLEGPLQQVPYPPKPILYSLERSPLQISDISSDNMQETNPITTQKDGSMEFNE	1077

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi462g00061	1077	Coils	Coil	676	696	-	-
	Sebi462g00061	1077	MobiDBLite	consensus disorder prediction	1056	1077	-	-
	Sebi462g00061	1077	SUPERFAMILY	Protein kinase-like (PK-like)	748	1027	IPR011009	-
	Sebi462g00061	1077	Gene3D	Transferase(Phosphotransferase) domain 1	828	1034	-	-
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase C-terminal	177	243	IPR032872	-
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase C-terminal	407	510	IPR032872	-
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase C-terminal	662	738	IPR032872	-
	Sebi462g00061	1077	Gene3D	Phosphorylase Kinase; domain 1	758	827	-	-
	Sebi462g00061	1077	SMART	serkin_6	752	1026	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi462g00061	1077	ProSitePatterns	Protein kinases ATP-binding region signature.	758	780	IPR017441	GO:0005524
	Sebi462g00061	1077	FunFam	PR5-like receptor kinase	827	1036	-	-
	Sebi462g00061	1077	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	875	887	IPR008271	GO:0004672\|GO:0006468
	Sebi462g00061	1077	ProSiteProfiles	Protein kinase domain profile.	752	1041	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Sebi462g00061	1077	PANTHER	LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4	17	252	IPR044652	GO:0004672
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase galacturonan-binding	40	105	IPR025287	GO:0030247
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase galacturonan-binding	289	353	IPR025287	GO:0030247
	Sebi462g00061	1077	Pfam	Wall-associated receptor kinase galacturonan-binding	525	589	IPR025287	GO:0030247
	Sebi462g00061	1077	Pfam	Protein kinase domain	757	1024	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi462g00061	Sebi-Chr462	805118	813219	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi462g00061	261	516	Receptor kinase-like Gene Family	AT5G38260	32.432	4.00e-34	138

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Sebi462g00061		Pkinase	1.8e-47	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi462g00061	-		-	cam:101490779	917.916