Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi462g00026 ATGAAGGTTAACGTGAAGACACTCAAGGGGACTCACTTTGAGATCGAAGTGAACCCACAAGACATGGTTACTGATGTGAAGAAAAATATAGAAGTAGCGCAAGGTGCTGATGTTTACCCTGCTGCACAACAAATGCTTATTTATCAAGGGAAAGTGCTAAAGGATGCTACAACCCTGGAAGAAAACAAAGTTGCTGAGAATAGTTTTATGGTGATCATGTTATCCAAGAATAAGGCATCATCAAGTGGAGCCCCGGCTGCTTCATCTGCACCCCCAAACCCGGCGGCTCAACCTGCAAGTTCTTTGCCTCTCACTTCATCAACATCTCAACCTCCTTCTTCGACTGTAGGACAGGGAGAATCCAATTCTGAGCATAATCCTGTTACAACTCCTTCTGCTACGGTGCCTAGCAGCATATATGGCCAAGCAGCATCAAATCTTATCGCTGGTAGTAATTTGGAATCAACTATTCAGCAGATTCTAGAAATGGGGGGAGGAAGTTGGGATAGGGATACTGTTATCCGTGCTCTTCGTGCTGCATTTAACAATCCTGAAAGAGCTGTTGAATATCTCTATTCTGGCATTCCTGAACAAGCTGATGTACCGGCAGTTGCCAGATCCGCCACAATTGGGCAGGCAGAAAACCCTTCAGTCCAGGCTCCACAACCAGCTGTGCCTACTGGTGGGCCTAACACTAACCCACTCAACCTGTTTCCCCAGGGCATTCCCAATTTGGGTACAAATGAAAATGCAGGTGACTTGGATTTCCTGCGAAACAGTCAACAGTTCCAAGCCTTGAGAGCGATGGTGCAAGCAAACCCTCAAATTTTGCAGCCTATGCTTCAGGAACTGGGAAAACAAAATCCTCACCTAATGCAGCTCATCCAAGAGCATCAAGCTGACTTCTTACGTCTTATAAATGAACCTGAAGGAGAAGGAGAGGGAGAAGGAGAAGAGAACCTACAGAATCAGTTGGCTTCTTTGATGCCTCCGACCATCACTGTCACCCCTGAAGAGCAGGAGGCCATTCAACGGCTTGAAGATATGGGATTTGATCGAGATCTGGTGTTGGAGGTGTTCTTTGCCTGCAATAAAAACGAGGATCTGGCAGCCAACTATCTATTGGATCACCAAAATGACTTTGACGACTAG 1152 0.4618 MKVNVKTLKGTHFEIEVNPQDMVTDVKKNIEVAQGADVYPAAQQMLIYQGKVLKDATTLEENKVAENSFMVIMLSKNKASSSGAPAASSAPPNPAAQPASSLPLTSSTSQPPSSTVGQGESNSEHNPVTTPSATVPSSIYGQAASNLIAGSNLESTIQQILEMGGGSWDRDTVIRALRAAFNNPERAVEYLYSGIPEQADVPAVARSATIGQAENPSVQAPQPAVPTGGPNTNPLNLFPQGIPNLGTNENAGDLDFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMQLIQEHQADFLRLINEPEGEGEGEGEENLQNQLASLMPPTITVTPEEQEAIQRLEDMGFDRDLVLEVFFACNKNEDLAANYLLDHQNDFDD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi462g00026 383 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Sebi462g00026 383 FunFam UV excision repair protein RAD23 B 245 310 - -
Sebi462g00026 383 FunFam UV excision repair protein RAD23 1 80 - -
Sebi462g00026 383 CDD UBA1_Rad23_plant 147 196 - -
Sebi462g00026 383 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Sebi462g00026 383 SUPERFAMILY Ubiquitin-like 1 91 IPR029071 -
Sebi462g00026 383 PRINTS DNA repair protein Rad23 signature 365 380 IPR004806 GO:0006289
Sebi462g00026 383 PRINTS DNA repair protein Rad23 signature 350 364 IPR004806 GO:0006289
Sebi462g00026 383 PRINTS DNA repair protein Rad23 signature 280 302 IPR004806 GO:0006289
Sebi462g00026 383 PRINTS DNA repair protein Rad23 signature 333 349 IPR004806 GO:0006289
Sebi462g00026 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 151 194 IPR015940 -
Sebi462g00026 383 Gene3D - 1 80 - -
Sebi462g00026 383 Pfam XPC-binding domain 254 309 IPR015360 GO:0003684|GO:0006289|GO:0043161
Sebi462g00026 383 SUPERFAMILY UBA-like 314 382 IPR009060 GO:0005515
Sebi462g00026 383 Gene3D - 146 196 - -
Sebi462g00026 383 Gene3D - 246 310 IPR036353 GO:0003684|GO:0006289|GO:0043161
Sebi462g00026 383 CDD Ubl_Rad23 1 74 - -
Sebi462g00026 383 FunFam UV excision repair protein RAD23 homolog 146 196 - -
Sebi462g00026 383 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 337 377 IPR015940 -
Sebi462g00026 383 Gene3D - 331 379 - -
Sebi462g00026 383 SMART CBM 252 295 IPR006636 -
Sebi462g00026 383 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 372 - -
Sebi462g00026 383 NCBIfam UV excision repair protein Rad23 1 382 IPR004806 GO:0006289
Sebi462g00026 383 SUPERFAMILY UBA-like 150 201 IPR009060 GO:0005515
Sebi462g00026 383 MobiDBLite consensus disorder prediction 80 136 - -
Sebi462g00026 383 Pfam UBA/TS-N domain 338 374 IPR015940 -
Sebi462g00026 383 Pfam UBA/TS-N domain 153 191 IPR015940 -
Sebi462g00026 383 SMART ubq_7 1 75 IPR000626 GO:0005515
Sebi462g00026 383 SMART uba_6 339 376 IPR015940 -
Sebi462g00026 383 SMART uba_6 153 193 IPR015940 -
Sebi462g00026 383 FunFam UV excision repair protein RAD23 homolog 331 378 - -
Sebi462g00026 383 SUPERFAMILY XPC-binding domain 251 316 IPR036353 GO:0003684|GO:0006289|GO:0043161
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi462g00026 Sebi-Chr462 363472 369236 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi462g00026 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 35.135 8.87e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi462g00026 K10839 - zju:107416575 516.924