Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi461g00016 ATGGTTGTGGATGATGGCAAATTGGATATAGGAGACCTTCAAGACCTTACTTCAAATAACTTAGAGAAAGATTGTTGTGGCTGGCTAAGCCTAAGCAGCTTCAGGGAACTGCCAAAGAGCCAACTTTATGTCCCACCTTACTCAATACATGACATGGAATGGTATCTAAGTTCCCCTGATGATTTTATATCTTTGAACGACCTGGAGCTGACGCCAGAGCACCAAAGTTATTATTATTTTGACAATGCCAGGGCCAGCCAATCACCTAAGGAGATGAATTTGAAGCACCAAAGCCGTGACGAAGAAATGAGAAAAAATGGGATTGGGATTGAGTCTTTGCTGCAGGGATTGATTGGGTTTACAAGGAAGAAAAGGAGGACGAAAAATTATCATCAGAAGCGGAAATGGAGAGTGAGATGGGTAAAAAAGAGGTGCAGCCATTGCAAGACGGAAGAGACACCGCAATGGAGGGTAGGGCCTTTGGGACCTAAGACACTGTGCAATGCTTGCGGAGTGCGATTCAAGTCTGGACGGTTAGTTCCTGAATATCGTCCAGCCACTACTCCCACCTTTGATAGTAGGAAGCATTTCTAA 594 0.4444 MVVDDGKLDIGDLQDLTSNNLEKDCCGWLSLSSFRELPKSQLYVPPYSIHDMEWYLSSPDDFISLNDLELTPEHQSYYYFDNARASQSPKEMNLKHQSRDEEMRKNGIGIESLLQGLIGFTRKKRRTKNYHQKRKWRVRWVKKRCSHCKTEETPQWRVGPLGPKTLCNACGVRFKSGRLVPEYRPATTPTFDSRKHF 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi461g00016 197 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 142 192 - -
Sebi461g00016 197 Gene3D - 138 196 IPR013088 GO:0006355|GO:0008270
Sebi461g00016 197 Pfam GATA zinc finger 145 178 IPR000679 GO:0006355|GO:0043565
Sebi461g00016 197 ProSiteProfiles GATA-type zinc finger domain profile. 143 175 IPR000679 GO:0006355|GO:0043565
Sebi461g00016 197 CDD ZnF_GATA 144 195 IPR000679 GO:0006355|GO:0043565
Sebi461g00016 197 SMART GATA_3 139 189 IPR000679 GO:0006355|GO:0043565
Sebi461g00016 197 FunFam GATA transcription factor 140 189 - -
Sebi461g00016 197 PANTHER GATA TRANSCRIPTION FACTOR 127 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi461g00016 Sebi-Chr461 240114 240707 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi461g00016 34 196 C2C2-Gata Transcription Factor Family AT4G34680 39.634 4.23e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi461g00016 GATA 1.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi461g00016 - - aprc:113869248 266.929