Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi461g00014 ATGGCTCCGTTTCGCATTTTAAGTTTCGACATTGAGTGTGCTGGTCGTAAAGGTCATTTTCCTGAGCCTACCCATGATCCTGTTATCCAGATTGCTAATCTGGTTACCTTACAAGGAGAAGACCAACCATTTATTCGTAATGTGATGACCCTTAAATCATGTTCTCCTATTGTTGGTGTTGATGTGATGTCATTTGATACAGAAAGAGAAGATTTTATCCGTGAAGTGGACCCTGATATTATTATTGGATATAACATCTGCAAATTTGACTTGCCATATCTTATTGAGAGAGCCACAGCCCTAAAAATAGCAGAATTTCCAATTCTGGGCCGTATCAGGAACAGTAGAGTTCGAGTAAAGGATACAACTTTCTCATCAAGGCAGTTAGGTACCAGGGAAAGCAAAGAAGTTACAGTTGAAGGGAGAGTTCAGTTTGATTTGCTCCAGGCTATGCAAAGAGACTACAAATTAAGTTCTTATTCATTGAATTCTGTGTCAGCACACTTCCTTTCTGAGCAGAAAGAGGATGTTCATCATTCAATTATATCTGATCTTCAGAATGGAAATGCAGAAACTAGGAGGCGCCTTGCTGTGTATTGTTTAAAGGATGCATATCTCCCTCAACGGCTTTTGGATAAATTGATGTTTATTTACAATTATGTGGAGATGGCTCGAGTAACAGGTGTCCCAATTTCTTTTCTTCTTTCCAGGGGCCAAAGCATTAAGGTACTCTCTCAACTTCTTAGGAAAGCAAAACAGAAGAACCTGGTCATTCCTAATGCCAAACAGGCAGGGTCAGAACAAGGAACGTTTGAAGGTGCCACTGTATTGGAGGCAAGGGCTGGATTTTATGAAAAGCCAATTGCTACTTTAGATTTTGCATCCTTGTATCCGTCTATTATGATGGCCTATAATTTATGTTATTGTACTCTGCTGACCCCTGAAGATGCTCGCAAGCTCAACATCCCTCTGGAGTCAGTGAACAAAACTCCATCTGGTGAAACATTTGTTAAATCAAATTTACAGAAGGGCATACTTCCTGAAATACTTGAAGAGCTATTAACAGCCCGTAAAAGGGCGAAAGCAGACTTAAAGGAGGCAAAGGATCCCCTTGAGAAGGCTGTGCTAGATGGTAGACAGCTGGCCCTCAAGATTAGTGCAAATTCTGTATATGGGTTTACAGGGGCTACTATTGGCCAATTACCATGCTTAGAGATATCATCCAGTGTAACAAGCTATGGTCGACAGATGATCGAGCACACTAAAAAACTTGTGGAAGATAAATTTATAACGCTTAATGGCTATGAGCACAATGCTGAGGTAATATATGGAGACACAGATTCAGTCATGGTACAGTTTGGTGTTTCTTCTGTAGAAGAGGCTATGAACTTGGGGAGAGAAGCTGCCGAATATATTAGTGGAACTTTCATAAAGCCCATCAAGCTAGAATTTGAGAAGGTTTACTATCCATATCTCCTGATTAGCAAGAAGAGATATGCTGGTTTGTTTTGGACAAAACCTGACAAATTTGACAAAATGGACACTAAAGGTATTGAAACAGTTCGAAGAGACAATTGCTTATTGGTAAAAAACCTGGTGAACGATTGCCTTCACAAAATACTGATTGACAGGGACATTCCTGGGGCAGTCCAGTATGTCAAGAATGCGATTTCAGATCTTCTCATGAACCGTATGGATTTATCACTTCTGGTCATTACAAAGGGTTTGACGAAGACAGGAGATGATTATGAAGTAAAGGCAGCTCATGTTGAACTTGCTGAAAGGATGCGCAAGCGAGATGCTGCTACTGCTCCAAATGTTGGAGATAGAGTACCTTATGTTATTGTTAAAGCTGCAAAAGGTGCCAAGGCTTATGAGAGATCAGAGGATCCTATCTATGTGCTGGAGAACAACATACCAATAGATCCTCAGTACTATCTTGAGAATCAAATTAGCAAGCCAATTCTGAGAATATTTGAACCAATTCTGAAAAATGCTAGCAAGGAACTTCTCCATGGAAGCCACACAAGATCTATTTCTATTTCTACTCCATCAAACAGTGGCATAATGAAATTTGCTAAGAAACAACTTACTTGCATTGGTTGCAAAGCTTTACTTAGCAATGGAGATCGTACTCTCTGCTCACATTGCAAAGGAAGGGAAGCTGAACTGTACTGTAAAACAGTGGCTCAAGTGTCTGATCTGGAGATGCTTTTTGGGAGGTTGTGGACACAGTGTCAGGAGTGCCAAGGTTCACTTCATCAGGATGTTCTCTGCACAAGTCGGGATTGTCCAATTTTTTATCGACGTAAAAAGGCACAGAAAGATATGGCTGAAGCAAGGTTGCAATTGGACCGATGGAACTTCTAA 2370 0.4055 MAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQGEDQPFIRNVMTLKSCSPIVGVDVMSFDTEREDFIREVDPDIIIGYNICKFDLPYLIERATALKIAEFPILGRIRNSRVRVKDTTFSSRQLGTRESKEVTVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLLTPEDARKLNIPLESVNKTPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAKDPLEKAVLDGRQLALKISANSVYGFTGATIGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFITLNGYEHNAEVIYGDTDSVMVQFGVSSVEEAMNLGREAAEYISGTFIKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDKFDKMDTKGIETVRRDNCLLVKNLVNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLTKTGDDYEVKAAHVELAERMRKRDAATAPNVGDRVPYVIVKAAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPILRIFEPILKNASKELLHGSHTRSISISTPSNSGIMKFAKKQLTCIGCKALLSNGDRTLCSHCKGREAELYCKTVAQVSDLEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRKKAQKDMAEARLQLDRWNF 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi461g00014 789 CDD POLBc_delta 270 663 - -
Sebi461g00014 789 NCBIfam DNA polymerase (pol2) 75 660 - -
Sebi461g00014 789 FunFam DNA polymerase 517 673 - -
Sebi461g00014 789 Pfam DNA polymerase family B 229 662 IPR006134 GO:0000166|GO:0003677
Sebi461g00014 789 Gene3D - 3 215 IPR036397 GO:0003676
Sebi461g00014 789 Gene3D - 517 672 IPR042087 -
Sebi461g00014 789 PRINTS DNA-directed DNA-polymerase family B signature 380 392 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi461g00014 789 PRINTS DNA-directed DNA-polymerase family B signature 288 301 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi461g00014 789 PRINTS DNA-directed DNA-polymerase family B signature 441 449 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi461g00014 789 ProSitePatterns DNA polymerase family B signature. 443 451 IPR017964 GO:0000166|GO:0003676
Sebi461g00014 789 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 1 755 - -
Sebi461g00014 789 FunFam DNA polymerase 344 396 - -
Sebi461g00014 789 Gene3D Helix hairpin bin 344 396 - -
Sebi461g00014 789 Pfam C4-type zinc-finger of DNA polymerase delta 699 770 IPR025687 -
Sebi461g00014 789 SUPERFAMILY Ribonuclease H-like 2 252 IPR012337 -
Sebi461g00014 789 Gene3D Palm domain of DNA polymerase 271 500 IPR023211 -
Sebi461g00014 789 SUPERFAMILY DNA/RNA polymerases 254 664 IPR043502 -
Sebi461g00014 789 Pfam DNA polymerase family B, exonuclease domain 2 165 IPR006133 -
Sebi461g00014 789 SMART polmehr3 2 455 IPR006172 GO:0000166|GO:0003676|GO:0003887
Sebi461g00014 789 FunFam DNA polymerase 42 269 - -
Sebi461g00014 789 CDD DNA_polB_delta_exo 1 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi461g00014 Sebi-Chr461 204282 215479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi461g00014 1 789 Core DNA Replication Machinery Family AT5G63960 85.345 0.0 1446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi461g00014 K02327 - gmx:100817379 1506.89