Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi460g00052 ATGATGACTAAGCTCAACCTGAGAGCATTGGTCTTTTCCCTCTTGATGTTTGTCCCCTCATTGGGAAAAGACCTGCTGAGCTGTGAAACAACATCCCCAGATGCTTCTGGCTACCCTTGCTATGAATATGAATCACAGAGGCAATGTGAAACATTTGCACTCATTCACACAAACTCATATTACTCTTCTCTCTTCAATTTGACCTTTTACTTGGGAGTCAACCGTTTCCTAATAGCAGAAGCAAATAGGTTTCCTGCTGAAACTGAGTTCTTCTCCCAGGACCAACCTCTTTTGATACCAATTGATTGCAAGTGCAAAAGTGGCATCTTTCATGCTGCAATAACCAAAACTTGTATCAAAGGGGAGAGCTTTTATGGTATTGCTCAATCACTAGAGGGCTTGACAACATGTAAGGCTATCCAAGACAAGAACCCGGGTGTGTCACCATGGAATCTTGATGATAAAGTCAGATTGATGATCCCATTGAGATGTGCCTGCCCAGTTTTATCAAAAGTTAGCCTACAGCCAAGACTTCTGCTTTCTTATCCAGTAAGAGAAGGTGATACAATTTCTAATTTGGCTTCAAAGTTCAATATCACAATAGAAGCTATTATTTCTGCAAATCACATATCATCTGAAAGCTTTAGACCTGAAAATCTGACACCCTTTACCTCTCTTTTGATTCCACTCAATGGGGAGCCTATTCTTGGTTCTCTGGCTAAACCCTGGGAACACAATTCAGGTCTTCCACCACCCAGCATACCAGTGATAAGTTCACACAAGAAAACAAAAAGAATGAAGAGAATTCATGCAAGGGAAATGATGTGGAGCTACAAACATCTCAACTTTAGCATAAGAACAGCCAGTAGCAGCAAAGTTTCATTTGAGGGATCTCAGTACACACATGATGGAAAAATAATTGATACCACAGCACATAAGAAGTTGCTGGAGTCATACACCATTGAAGAGATGAGGAAAGCAACTGATAACTTCAATTCCAGCAATCACATTGAGGGGTCTATGTATCATGGTCATCTAAATGGGAAAAGCATGGCAATAAAACATACAAAGACAGAGACAGTGTCAAAGATTGATTTTGGCCTTTTCCATGATGTTGCTCACCACCATCCCAACATAATTAGACTGCTGGGAACTTGTTTGATGGAGGGTCCACAATCATATTTGGTCTTTGAGTATGCCAAAAATGGATCTTTAAAAGATTGGCTTCATGGTGGCTTGGCCATCAAGAACCAGTTTATTGCTTCTTGCTATTGTTTTTTGACATGGGACCAAAGGCTCAGGATCTGCCTTGATGTGGCCATGGCCTTGCAGTATATGCACCAGGTTATGAAACCAAGCTATGTGCATAGAAATGTAAAGAGCAAAAACATCTTTTTAGATGAAGAATTTGGTGCAAAGATTGGCAATTTTGGGATGGTGGGGTGTGTTGAGAATGACACTGAGGACCCAAAATTGTATTCAACCAACCCTGCATCTTGGAGTGTGGTTTATTTGGCCCCTGAATATGTGCACCAAGGTATAGTTTCTCCAAGCATTGATATGTTTGCATATGGGGTGGTTTTGTTGGAAGTTTTGTCTGGCCAAACACCAATAAGCAGGTCCAATGAAGGAAGCCTTCTGCTTACTGATAAAATAAAGTCCATTTTGAAGTCAGAAGATGGGAATGAACTAAGGGAGTGGATGGACAGTGCATTAGGTGAAAGCTATTCATTTGATGCAGCTGTGACATTAGCCAATATTGCTAGGGCTTGTGTGGAAGAAGATTCTTCTTTGAGACCAAGTGCAGGGGAAGTTATTGAGAAGCTATCTAGATTGGTGGAGGAATTACCAGAAGGGGAGCAACACATGTTGAAGTGTGAAAGCTCATGTGAACCTCTAGTGATGGCCGTAGAAAACATTGAAGGAACCCAAAAAATGTAG 1941 0.4106 MMTKLNLRALVFSLLMFVPSLGKDLLSCETTSPDASGYPCYEYESQRQCETFALIHTNSYYSSLFNLTFYLGVNRFLIAEANRFPAETEFFSQDQPLLIPIDCKCKSGIFHAAITKTCIKGESFYGIAQSLEGLTTCKAIQDKNPGVSPWNLDDKVRLMIPLRCACPVLSKVSLQPRLLLSYPVREGDTISNLASKFNITIEAIISANHISSESFRPENLTPFTSLLIPLNGEPILGSLAKPWEHNSGLPPPSIPVISSHKKTKRMKRIHAREMMWSYKHLNFSIRTASSSKVSFEGSQYTHDGKIIDTTAHKKLLESYTIEEMRKATDNFNSSNHIEGSMYHGHLNGKSMAIKHTKTETVSKIDFGLFHDVAHHHPNIIRLLGTCLMEGPQSYLVFEYAKNGSLKDWLHGGLAIKNQFIASCYCFLTWDQRLRICLDVAMALQYMHQVMKPSYVHRNVKSKNIFLDEEFGAKIGNFGMVGCVENDTEDPKLYSTNPASWSVVYLAPEYVHQGIVSPSIDMFAYGVVLLEVLSGQTPISRSNEGSLLLTDKIKSILKSEDGNELREWMDSALGESYSFDAAVTLANIARACVEEDSSLRPSAGEVIEKLSRLVEELPEGEQHMLKCESSCEPLVMAVENIEGTQKM 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi460g00052 646 Gene3D Phosphorylase Kinase; domain 1 303 399 - -
Sebi460g00052 646 ProSiteProfiles Protein kinase domain profile. 310 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi460g00052 646 SUPERFAMILY LysM domain 181 216 IPR036779 -
Sebi460g00052 646 Pfam LysM domain 182 229 IPR018392 -
Sebi460g00052 646 Pfam Protein kinase domain 346 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi460g00052 646 SUPERFAMILY Protein kinase-like (PK-like) 314 609 IPR011009 -
Sebi460g00052 646 Gene3D Transferase(Phosphotransferase) domain 1 400 629 - -
Sebi460g00052 646 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 20 616 - -
Sebi460g00052 646 FunFam PTI1-like tyrosine-protein kinase 3 400 623 - -
Sebi460g00052 646 Gene3D LysM domain 180 229 IPR036779 -
Sebi460g00052 646 SMART LysM_2 181 229 IPR018392 -
Sebi460g00052 646 ProSiteProfiles LysM domain profile. 180 228 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi460g00052 Sebi-Chr460 631258 633295 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi460g00052 37 634 LysM Receptor-like Kinase (LYKs) Gene Family AT3G01840 40.278 7.89e-146 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi460g00052 Pkinase 4.2e-30 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi460g00052 - - gmx:100816082 930.628