Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi460g00048 ATGCCTCAAACTCTGCAACTTAGAACACCTCGCTCACTCTCAAAACCTACAAAGATGAAGACTTTCTCCTCAATTCAACCACCCCAGCATTTCCCTTGCACCAGATTTTTCTCTTCCACTACCACAAGGACTCAACTTTCTTTTCCTGCAAAGCTCTTCTTTTGCCAGGCAAAATCTGGCATAGATGGGTCATTGAACATAAAAGTGATGCCTTCCACTCTGTTAACAGCAGAAAAGGAAGAAGCCAAGGCTGTATTGACATTGTTTTTGAAGAAACAAGGTTTGAGCAATGCAATTGCAGCAAGAACAATCAACAAGTCAGATCTATTTATTGATCACCTTGTTTCAAAGCTTCACTATAAACACAAAACCCGGTACCTTGCAGGGAGAGAGCTTACAACTCTTGAGATCAGGGATGCTCTTATTCCATATCTTGAATCCCTTTCTGAAGAGCATGGAGACATTCTAGTGGATGTAGTGGAAAACTATCCAAACCCACCTGTTAAGGGAAAATCAGGTGTGGCAATTCCTCCTCCTAGTCCAATGGTAGATTCTAAGAAGCTTAAAGCCACGTCTCGAGTGAATGTGATGGATCCAACTGCTGGCAAGCTTCGCCCTCATATTGTCTATCTCATGGAACTTGGTATGGATATTGAGCAGATTAGGAGTATTACACGACGATTCCCATCTTTTGCCTACTATAGCTTGGAGGGTAAAATTAAGCCAGTGGTTGAGTTTTTTCTTGAACTTGGAGTGCCAAAAGAAAACATTGCCACCATCCTCACTAAAAGGCCTCAATTATGTGGAATCAGTCTATCAGAAAATCTTAAACCCACCATGAAGTTCTTTGAATCTTTAGGTGTTGACAAGAGACAATGGCCAAAGGTGATTTACCGCTTCCCAGCGCTGCTAACTTATAGCAGACAGAAAGTGCGGGAAAGTGTAGATTTTCTCCATGAATTGGGCCTCTCAGAAGAGAACATAGGTAAGATTTTAACTCGCTGCCCCAATATTGTTAGTTACAGTGTAGAGGACAATCTCCGACCAACAGCTAAGTACTTCCGTTCTTTGGGGGTTGATGTTGGCATTCTTCTATTTAGGTGTCCACAAAATTTTGGTCTTAGTATTGAGGCCAATCTAAAGCCTGTAACAGAATTTTTCTTGGAGAGGGGATACACTTCAGAAGAAATTGGGACCATGATTTCAAGATATGGAGCCTTGTATACTTTTAGTTTGACTGAGAATTTGATTCCAAAATGGGATTTCTTTATGACCATTGATTATCCAAAATCTGAGCTGGTTAAATTCCCTCAATTTTTTGGATACAGTTTAGAACAAAGAATTAAACCAAGGTATGCACGCATGAAAAAATCTGGAGTGAGATTACTGCTAAATCAGGTTCTTTCACTGTCAGACAGCAACTTTGAGGAGGCCTTGAAAAAGAAAATGAAGAAAATGCAAGCTGATTAG 1470 0.4048 MPQTLQLRTPRSLSKPTKMKTFSSIQPPQHFPCTRFFSSTTTRTQLSFPAKLFFCQAKSGIDGSLNIKVMPSTLLTAEKEEAKAVLTLFLKKQGLSNAIAARTINKSDLFIDHLVSKLHYKHKTRYLAGRELTTLEIRDALIPYLESLSEEHGDILVDVVENYPNPPVKGKSGVAIPPPSPMVDSKKLKATSRVNVMDPTAGKLRPHIVYLMELGMDIEQIRSITRRFPSFAYYSLEGKIKPVVEFFLELGVPKENIATILTKRPQLCGISLSENLKPTMKFFESLGVDKRQWPKVIYRFPALLTYSRQKVRESVDFLHELGLSEENIGKILTRCPNIVSYSVEDNLRPTAKYFRSLGVDVGILLFRCPQNFGLSIEANLKPVTEFFLERGYTSEEIGTMISRYGALYTFSLTENLIPKWDFFMTIDYPKSELVKFPQFFGYSLEQRIKPRYARMKKSGVRLLLNQVLSLSDSNFEEALKKKMKKMQAD 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi460g00048 489 Gene3D Transcription termination factor 3, mitochondrial 263 485 IPR038538 -
Sebi460g00048 489 PANTHER CGI-12 PROTEIN-RELATED 189 480 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 362 393 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 430 461 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 398 429 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 329 360 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 185 217 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 294 324 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 Pfam mTERF 378 476 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 Pfam mTERF 209 389 IPR003690 GO:0003690|GO:0006355
Sebi460g00048 489 FunFam Transcription termination factor MTERF5 chloroplastic 265 485 - -
Sebi460g00048 489 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi460g00048 Sebi-Chr460 533065 535353 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Sebi460g00048 mTERF 2.8e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi460g00048 K15031 - gmx:100781900 805.053