Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi460g00025 ATGGGAAGACAGCCATGTTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACAATTGAGGAAGATCATAAGCTCATGAATTTCATCCTCAACAATGGCATCCACTGCTGGCGAACAGTTCCTAAGCTTGCAGGACTTCTAAGATGTGGAAAGAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTCAAGAGAGGTGGCTTTACAGAAATGGAAGAGGATCAAATTATACAACTACATTCATGTCTTGGTAACAGGTGGTCTAAGATTGCTGCACATTTTCCAGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAAAATCAAGAAGAGGTTGAAGCTCCTTGGTCTGGATCCTGTGACCCTGAAGCCAATTGAGCAAAAGGAACAGTCTGATGATGACAAAAATAAGAGAGACATACAGCCAATTACTTCAAAAAGGCCTGAAGGTGTGGAGAATAATTCCTTGGACATTCATCATGGCAGAGAAGAAATGCCAAAAACAGAAGGGAGAAGAGAGGAAGATAAGGTGATTTGGGATGATACCTCCTCAGGATTTTTAAACAATTATGAAATGCTATGCTCACAGTTGGACTTGGGATCATGGATGAGTCAAGAAACCAAAACCAGTACTAGTTCTTACTGTAGTTCTTCTTTCTCTCTGGATGATTCTACCAACCTTTCTGTGGGTGAATCCCCTTGCCTTAAGGATAATTCATTACAACAATGGGTTGATGGTTTGGATTCCATTCTCTCATGGGATAGCTTCAATCCTCTTGAAAAAGATTTTTATCTTCTTGGAAAATAA 819 0.4066 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRTVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHSCLGNRWSKIAAHFPGRTDNEIKNHWNTKIKKRLKLLGLDPVTLKPIEQKEQSDDDKNKRDIQPITSKRPEGVENNSLDIHHGREEMPKTEGRREEDKVIWDDTSSGFLNNYEMLCSQLDLGSWMSQETKTSTSSYCSSSFSLDDSTNLSVGESPCLKDNSLQQWVDGLDSILSWDSFNPLEKDFYLLGK 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi460g00025 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi460g00025 272 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi460g00025 272 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi460g00025 272 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 221 - -
Sebi460g00025 272 CDD SANT 16 61 IPR001005 -
Sebi460g00025 272 FunFam MYB transcription factor 11 67 - -
Sebi460g00025 272 FunFam MYB transcription factor 68 129 - -
Sebi460g00025 272 SMART sant 66 114 IPR001005 -
Sebi460g00025 272 SMART sant 13 63 IPR001005 -
Sebi460g00025 272 Gene3D - 11 67 - -
Sebi460g00025 272 MobiDBLite consensus disorder prediction 129 178 - -
Sebi460g00025 272 CDD SANT 70 110 IPR001005 -
Sebi460g00025 272 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi460g00025 272 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Sebi460g00025 272 Gene3D - 69 147 - -
Sebi460g00025 272 MobiDBLite consensus disorder prediction 156 178 - -
Sebi460g00025 272 MobiDBLite consensus disorder prediction 129 149 - -
Sebi460g00025 272 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi460g00025 272 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi460g00025 Sebi-Chr460 277603 279087 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi460g00025 1 153 MYB Transcription Factor Family AT5G16600 68.182 1.22e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi460g00025 Myb_DNA-binding 8.6e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi460g00025 K09422 - gmx:100819471 466.077