Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi460g00017 ATGAAAAAAGCAACTCTTTGTAATGATGTGGCTGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTGTTATATTTGGTGGTCTTGTGAATTCTGATATGGCCGAAGATGTTCACCGTCAAGCCAGAGAGATCGGCACTGTGTGTTCTATTAAGTACCCCCTTTCGAGGAAAGATCTTGAGCAAAATGTTAGATTTTACCATTGCTTTGTGCCTGTTGTTAAGTCATCTCATGGCAAAGCAGATTCTAATGTAGATTTGCATCTATCTTGTACTGTTATACTTATAGGACTCCTGCAGGATGGCTGTACTTTGGATGCTTCAGCTGTACTTTATACAAGTGTAAAGTCAGCTCGAGCTTCTGTAGCAGTGTTACATAAAAAAGAGATAGGAGGAGGAATTGTTTGGGCCCGTCAACTGGGTGGAGAGCTTTTCATGTTTGTAGAGGAAGGGTATGTGTGGGATGTATTTATTCCACACAAATCAGACACAGGTCTGTCTAAGGGTTTTGCGTTTGTAAAATTCACCTGCAAGCTAGATGCAGAAAATGCCATTCAAAAGCTCAATGGATCAAAGTTTGAGAAACGGCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTCAGTAGTGATAAAAATGATGCTCTTGATTCAGAGACAGATTTAGGGCTTAATCTCATCTTCTCCATTATGCTGTTTGGACTTTGGATAGATTTGGTGACTATGTTGAGGTCAAAGTTCACTGCTCCTTTTTGTTGCCTTTTAAATTTCCCAGGGCAACAAAAGTTGAGAGATGATGATAGTAGAGCTACTGAGGACGATGTTGAGCATATTGACAAACAATCTTATGATGGAGATGATAGTAATGTAGATTACTCTAGTGCCATTGAGGAAGAAGGCAGTCCTTCTGAAGATAATTTTGAAAAGGAAGCAGACATCGCAAGAAAGGTCCTTAACAACTTGATTACATCTTCCACAAAAGGAGCATCTGTAAATAATGATTCTATGTGTTCCAAAGAAAATAAGGAGCCAAAATCCAATGAAATTGTTAAAGATGCAGATAGTAAAGCATCTAATGAGTCTGAAAAGGTTTCAGGTGTTTCTGAGCCTGAAATTTCCGGCAGAAGCAAGTTATCAAATAAACAAACAGAAGAAGATGATTTGCAAAGAACAGTTTTTATAAGTAATCTTCCCTTTGAATGTGATAATGAAGAAGTCAAACAACGATTTTCTGGATTTGGGGACGTAGAATACTTTCTTCCTGTTCTCCACCAAGTGACCAAGCGACCAAGAGGGACTGGTTTTCTTAAGTTCAAAACCGTAGAAGCTGCTGAAACTGCAATTTCAACGGCTAGTGCTGCTTCTGGGATGGGTATTTTACTGAAGGGTAGACCATTAAAAGTTTTAAAGGCTTTGGACAAGAAATCAGCTCATGACAAGGAACTGGAGAAAGCAAAAAATGAGGTTCATGACCACCGTAATATTTACTTGACAAAGGAAGGACTTATCCTTGAGGGAACTCCAGCTGCTGAAGGGGTTTCAACCAGTGATATGTTAAAACGCCAAGAGTTGGAAAGGAAAAAGAAGACAAAGCTTCAATCTCCAAATTTTCATGTTTCAAGAACTAGACTTGTTATCTACAACATACCAAAGTCCATGACTGAAAAAGAACTAAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACCAAGCAAAAACCTGTAATTCGGCAGATAAAGTTTTTGAAAGATGGAAAGAAAGGAAAGGTTTCTCAAGAACACCATTCACGTGGAGTTGCCTTTATTGAATTTTCGGAGCATCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAACCCTGAAACTTTTGGTCCTGAACATCGGCCTATTGTGGAGTTTGCTCTTGATAATGTTCAAACACTAAAACTTCGGAAGGCAAAGCTCCAATCTCAGCAGCAGGGTCCTCATGATGACATTGCCAAGGAAAATGACAAACCTGTCATAGCAGAAGTTCAGACACATGTAAAGGACAGAAAACAAAAACGAAAATCTCAAGAGCATGATAATTCAGTAAAGGACTCGGTACTGAATACAAATGGTGAATTAGGTAGTCAAATGGCAAATGGAAAATCCCCTCAAGGACGCAAATACAAAAGACAGAAAGGCAACAATCAGAGTGCAAATGCTGAATCACTAAAAGAAAATGCAAAAGCCTTGTCCAAGAAGTCAAAGAATAACCGAGATGGCCAGAATCATGGTGATGCATCTCTTGAAGGTCAAAACACTGGCATTGTCATTAGTGGAACAAAATCGGGAAACAAAGATAATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGAACAAGCAGGCCAAAAGGTTTCTAAGAAACGACCAAAGAAGAATAAAGATTCAGCAGGGAAGGACGTAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACACAAGGATTCCCAAGGGAATGATGGTGAGAAAAAAGCTTCTAAACAACTTAGAAAATGGTTCCAATCATAG 2568 0.3925 MKKATLCNDVADEGGCSEKQRVARTVIFGGLVNSDMAEDVHRQAREIGTVCSIKYPLSRKDLEQNVRFYHCFVPVVKSSHGKADSNVDLHLSCTVILIGLLQDGCTLDASAVLYTSVKSARASVAVLHKKEIGGGIVWARQLGGELFMFVEEGYVWDVFIPHKSDTGLSKGFAFVKFTCKLDAENAIQKLNGSKFEKRLIAVDWAVPKKIFSSDKNDALDSETDLGLNLIFSIMLFGLWIDLVTMLRSKFTAPFCCLLNFPGQQKLRDDDSRATEDDVEHIDKQSYDGDDSNVDYSSAIEEEGSPSEDNFEKEADIARKVLNNLITSSTKGASVNNDSMCSKENKEPKSNEIVKDADSKASNESEKVSGVSEPEISGRSKLSNKQTEEDDLQRTVFISNLPFECDNEEVKQRFSGFGDVEYFLPVLHQVTKRPRGTGFLKFKTVEAAETAISTASAASGMGILLKGRPLKVLKALDKKSAHDKELEKAKNEVHDHRNIYLTKEGLILEGTPAAEGVSTSDMLKRQELERKKKTKLQSPNFHVSRTRLVIYNIPKSMTEKELKKLCIDAVISRATKQKPVIRQIKFLKDGKKGKVSQEHHSRGVAFIEFSEHQHALVALRVLNNNPETFGPEHRPIVEFALDNVQTLKLRKAKLQSQQQGPHDDIAKENDKPVIAEVQTHVKDRKQKRKSQEHDNSVKDSVLNTNGELGSQMANGKSPQGRKYKRQKGNNQSANAESLKENAKALSKKSKNNRDGQNHGDASLEGQNTGIVISGTKSGNKDNVGFRKRKMQNQEEQAGQKVSKKRPKKNKDSAGKDVVDKLDMLIEQYRSKFSHKDSQGNDGEKKASKQLRKWFQS 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi460g00017 855 Coils Coil 636 656 - -
Sebi460g00017 855 PANTHER RNA-BINDING MOTIF PROTEIN 14B 148 221 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 332 388 - -
Sebi460g00017 855 Gene3D - 544 639 IPR012677 -
Sebi460g00017 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 207 IPR000504 GO:0003723
Sebi460g00017 855 MobiDBLite consensus disorder prediction 662 695 - -
Sebi460g00017 855 Gene3D - 326 491 IPR012677 -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 341 362 - -
Sebi460g00017 855 CDD RRM4_RBM28_like 545 642 - -
Sebi460g00017 855 SUPERFAMILY RNA-binding domain, RBD 149 209 IPR035979 GO:0003676
Sebi460g00017 855 Coils Coil 471 498 - -
Sebi460g00017 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 393 476 IPR000504 GO:0003723
Sebi460g00017 855 MobiDBLite consensus disorder prediction 808 849 - -
Sebi460g00017 855 Gene3D - 147 218 IPR012677 -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 757 779 - -
Sebi460g00017 855 SMART rrm1_1 546 637 IPR000504 GO:0003723
Sebi460g00017 855 SMART rrm1_1 394 472 IPR000504 GO:0003723
Sebi460g00017 855 SMART rrm1_1 136 203 IPR000504 GO:0003723
Sebi460g00017 855 FunFam Putative RNA binding ribonucleoprotein 322 490 - -
Sebi460g00017 855 SUPERFAMILY RNA-binding domain, RBD 393 623 IPR035979 GO:0003676
Sebi460g00017 855 MobiDBLite consensus disorder prediction 723 738 - -
Sebi460g00017 855 FunFam RNA-binding motif protein 28 544 639 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 696 716 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 266 310 - -
Sebi460g00017 855 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 545 653 IPR000504 GO:0003723
Sebi460g00017 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 395 453 IPR000504 GO:0003723
Sebi460g00017 855 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 149 200 IPR000504 GO:0003723
Sebi460g00017 855 CDD RRM3_RBM28_like 393 474 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 651 855 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 363 380 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 266 289 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 780 801 - -
Sebi460g00017 855 MobiDBLite consensus disorder prediction 740 756 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi460g00017 Sebi-Chr460 175756 182444 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi460g00017 148 208 Eukaryotic Initiation Factors Gene Family AT3G11400 39.344 1.45e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi460g00017 K14573 - gmx:100794821 1145.57