Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi460g00011 ATGACTCCCCTTTCATTCTTCCTTATTCTTTTTGCTCTTTCTCTTCTCACACCAAATTTTGTTTCCTCCTCTGCAGTTCAAGACCCTGAACTAGTTGTACAAGATGTACAAAGAAGCATTAATGCCTCTAGAAGAAACTTGGGATATTTATCTTGTGGAAGTGGTAACCCCATTGATGATTGCTGGAGGTGTGACCCTAATTGGGAGAACAACAGGCAGAGGCTAGCTGATTGTGCAATTGGGTTTGGCAAAGATGCAATTGGTGGAAAAAATGGCAGAATCTATGTTGTCACTGACTCTGGTGATGATGATGCTGTGAATCCCAGGCCAGGGACTCTAAGGTATGCTGCTATACAAGATGAGCCATTGTGGATTATCTTCAAGAGAGATATGGTGATTACTTTGAAAGAAGAGCTTCTTGTGAATTCCTTCAAGACAATTGATGGAAGGGGTGCTAGTGTTCACATTGCTGGTGGTGGTTGCATTACCATACATTATGTGAGTAACATTATCATCCATGGTATTCACATCCATGATTGTAAGCCTACAGGGAATACCAATATCAGAGACTCTCCACACCACTCTGGATTTTGGACTGTGTCAGATGGTGATGGAGTCTATAACCATCTCCAACACTACATGACCCATCATGACAAGGTTATGCTTTTGGGACACAGTGACTCTTACACAGAGGACAAGGACATGCAGGTCACTATAGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGACATGGGTATTTTCATGTGGTGAACAATGACTACACTCATTGGGAAATGTATGCTATTGGTGGGAGTGCTAACCCAACCATTAATAGCCAAGGGAATAGGTTTCTTGCACCAGATCTTAGGTTTAGCAAGGAGGTAACCAAACATGAGGATGCTCCAGAGAATGAATGGATGGGCTGGAACTGGAGGTCAGAGGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGAGCCTCAAGTCTTAGTGCAAGACCATCTTCTCTTGTTGGATCCATGACTGTCACTGCTGGTGTACTTAACTGCAGGAAGGGCTCTCGTTGCTGA 1122 0.4376 MTPLSFFLILFALSLLTPNFVSSSAVQDPELVVQDVQRSINASRRNLGYLSCGSGNPIDDCWRCDPNWENNRQRLADCAIGFGKDAIGGKNGRIYVVTDSGDDDAVNPRPGTLRYAAIQDEPLWIIFKRDMVITLKEELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPHHSGFWTVSDGDGVYNHLQHYMTHHDKVMLLGHSDSYTEDKDMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDLRFSKEVTKHEDAPENEWMGWNWRSEGDLFLNGAFFRQSGAGASSSYARASSLSARPSSLVGSMTVTAGVLNCRKGSRC 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi460g00011 373 PANTHER PECTATE LYASE 18-RELATED 24 206 IPR045032 GO:0030570
Sebi460g00011 373 Gene3D - 55 208 IPR012334 -
Sebi460g00011 373 Gene3D - 209 366 IPR012334 -
Sebi460g00011 373 SMART amb_all 130 296 IPR002022 -
Sebi460g00011 373 Pfam Pectate lyase 213 290 IPR002022 -
Sebi460g00011 373 PRINTS Pollen allergen Amb family signature 78 95 IPR018082 -
Sebi460g00011 373 PRINTS Pollen allergen Amb family signature 138 154 IPR018082 -
Sebi460g00011 373 PRINTS Pollen allergen Amb family signature 102 127 IPR018082 -
Sebi460g00011 373 SUPERFAMILY Pectin lyase-like 56 364 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi460g00011 Sebi-Chr460 90756 92684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi460g00011 4 373 Polysaccharide Lyase AT5G63180 69.630 0.0 551
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi460g00011 K01728 - csav:115701405 617.076