Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00110 ATGTCAGATGACATGCTCGTGCATTTCTCGTCCAACTCTTCCAACCAATCGGACCAGTCTCTGCCTACAAAGATTGCAAAGCTGGAAGCTCGAATGGTGGGCAAAGGTTCTTCCACCGCTGCTCAGCCTCAGCAGTCAGGTTGGTCCTCTGTTCCTTCAGCTGGGAAATTCGGTGGAGCTGCTGAGGATTTGCCTGAACCATCCACATCCAGTGATTCTGATGATGATAATGGTGGGGAATTCCTAATTCAAGCCAACACACAGAAGCGCCAGAAACTTCAAGAAGCTGATAACTCTAATGTTTTTGAACGTGTTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGAGGCCATGGAGACAAAAGTTAATGTTGATGTGAACAGAAAGAAACATGGTCGTGGAAGAGGGGGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAGGGTGAATGATCAAACCAGAACACAAATATCTCCTCCAACTGTTTTGGCTTCTAATGGTCAGATTGAGAATGTACACCATAAAGATGGCAGACTGAAAGATCAGTTTCATAGTGATAATTTTTCTTCATCAGAGGAGGAGGTTGCATCTCTACGTGCAAAAGTTGTTGCATTGGAGGAGGACTTGCGTAAATCAAAGCACGAAGCCTCTGATTATCAGAATCTTTGTCGACAGCTAGAAAAGGAACTTAATGACCTGAAGGATCAGGAACAGCAAATGAAGCCCAAGAGAACAAAAATAATATCTGATTTGCTGATATCAGTCTCAAAGTCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTCGGTGTAATCAGAGCCGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATGCCCAGCTTAGACAACTAATAGAAACAAAGGAGGCAATTGAACGGCAGCGCAAATTATTTAAGAAAAAACATTCTGATAAGGGTGATGGAACAGATGCAGAGGCTGGATTACCGGAAGATGTTCTCATTCATGATGAAATCTATAAATCTCGACTAGCTAGCATTAAACGAGAAGAAGAAACTATTTTGCGGGAGAGGGATCGCTATGAACTAGAGAAGGGGAGGTTGATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCGCTTCTAAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCAATCCGGGAGTATAATATTCACAAGACGCTGGTCCATCGTCACATTGTTCGATTATGGGACATTTTTGAGATTGATCACAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGTAAGGATCTTGATGCTATCCTTAAAGCAACACCTATATTGCCTGAGAGGGAGGCTAGGGTCATTCTAGTTCAGGTTTTTCAAGGCCTTATTTACATGAATAAAAGAACGCAGAAGATTATCCATTATGATTTAAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGAGTTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGATGTGGGATCCCAGGGTATGGAACTTACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCTGAGTGCTTTGAGCTTAGCAAGACTCCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTATGTTCTATCAAATGCTCTTTGGTAAACGTCCTTTCGGACATGACCAAACACAAGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGAATTTCCCCCTAAACCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGAAGTGTCTAACATACAACCAGGTTGAGAGACCAGATGTATTAACCATTGCTCAAGATCCCTATCTCACTTACTCAAAGAAGTGA 2040 0.4245 MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTAAQPQQSGWSSVPSAGKFGGAAEDLPEPSTSSDSDDDNGGEFLIQANTQKRQKLQEADNSNVFERVEVVTEGRQTSLEAMETKVNVDVNRKKHGRGRGGSGSGRGRGSRVNDQTRTQISPPTVLASNGQIENVHHKDGRLKDQFHSDNFSSSEEEVASLRAKVVALEEDLRKSKHEASDYQNLCRQLEKELNDLKDQEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLRQLIETKEAIERQRKLFKKKHSDKGDGTDAEAGLPEDVLIHDEIYKSRLASIKREEETILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAILKATPILPEREARVILVQVFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGIMFYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPPKPTVSNEAKDFIRKCLTYNQVERPDVLTIAQDPYLTYSKK 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00110 679 MobiDBLite consensus disorder prediction 145 159 - -
Sebi45g00110 679 MobiDBLite consensus disorder prediction 1 98 - -
Sebi45g00110 679 SUPERFAMILY Protein kinase-like (PK-like) 393 675 IPR011009 -
Sebi45g00110 679 MobiDBLite consensus disorder prediction 1 23 - -
Sebi45g00110 679 ProSitePatterns Protein kinases ATP-binding region signature. 407 430 IPR017441 GO:0005524
Sebi45g00110 679 CDD STKc_TLK 400 673 - -
Sebi45g00110 679 PANTHER MIXED LINEAGE PROTEIN KINASE 11 678 - -
Sebi45g00110 679 FunFam Serine/threonine-protein kinase TOUSLED 392 679 - -
Sebi45g00110 679 Coils Coil 188 243 - -
Sebi45g00110 679 MobiDBLite consensus disorder prediction 37 52 - -
Sebi45g00110 679 MobiDBLite consensus disorder prediction 125 159 - -
Sebi45g00110 679 Coils Coil 352 386 - -
Sebi45g00110 679 ProSitePatterns Serine/Threonine protein kinases active-site signature. 527 539 IPR008271 GO:0004672|GO:0006468
Sebi45g00110 679 ProSiteProfiles Protein kinase domain profile. 401 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi45g00110 679 Gene3D Transferase(Phosphotransferase) domain 1 392 679 - -
Sebi45g00110 679 MobiDBLite consensus disorder prediction 71 95 - -
Sebi45g00110 679 Pfam Protein kinase domain 402 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi45g00110 679 SMART serkin_6 401 674 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi45g00110 679 Coils Coil 296 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi45g00110 Sebi-Chr45 2329481 2337926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi45g00110 384 679 MAP Kinase Kinase Kinase AT3G13530 28.383 4.67e-29 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Sebi45g00110 Pkinase 2.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00110 K08864 - gmx:100805168 1187.94