Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00079 ATGGATGTTCAAGTGATAAACATGGGAGAAGGCAGTGACCATCGAGCTATGGCAAATGGTGGGGATGCTGAACCTAGTGAAGGTGAAGTTAATAATGCTGGAAACTCTGGATCTCATGTTGAGGTTGGGGTTTCTGAGCCATATTTGGGAATGAAATTTGATTCTGAAGATGCTGCAAAAACTTTCTGCAATGACTATGCCAGACGTGCAGGTTTCAGCTCCAAAGCTGGCTCACTTGGTCAGCTTAAATCTGATGGGACCAATATGTACTGGGAATTTGTGTGCAGGGGGGAAGATTTAAAAAGAAAGCTTACTGAAAGTTGTAACGCAATGATTAGGATAGAGAAAAAGGGTCAAAGTAAGTGGTTTGTTACAAAATTTGTGAAGGAGCATAACCATTCCATGGTGAGCCATAGTAAGGTGAATAAACTTCAACCACGCAAGCACTTTTCTAGTGTTGGAAGAACTATGCCTGATACTTACCAAGGAGTGGGGCTCGTTCCAAGTGGTGTCATGTATATATCTTTAGATGGGAATCACATGCCGACTGAGAATATTCATGGGAATAGGAATAATCCTGCAGCTGCTACTGCTGAAACTAGTCACCCAGTTAATATTCATGGGATTAGGAATAATCCTGCAGCTGCTACTGCTGAAACTAGATACCCAGTTAAAAATCCCATATCAATGAATTATACTGTCAGTGTCAAGCCACCTATTCAAAAGAGGACGTTAGGGAGGGATGCTCGGAACCTGCTGGATTATTTTAAGAAAATACAGGCTGAGAACCCTGAGACAATTGAGGAGTTTGATTCATCTTGGAATTCTATCATCAGTAAATATGAACTCGGAAAAAATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGCTAAATGGGTTCCAGCATATTTCCGTGATTCATTTTTGCTGCAGTATGAACAAGCTTTGGAGAGCTGGTCTCAAAAGGAAATAGAAGCAGATTTTGAGACAATTTGCACCTCACCAGTTCTAAAGACACCTTCACCAATGGAGAAGCAGGCTGCTGATCTTTATACACGGAAAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACTGCCAACAGATTTGAAGAAGATGGAGAAAATAGTATATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGTCATATATTGTCACATTAAACCATTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTTTTGACTGTTTTCACTGTGACTAATGTACTTACATTACCATCCCATTACATCTTAAAACGGTGGACAAGGAATGCAAAAAGCGGCATCGGATCAGATGAATGTGCTGGTGAATCACATGGAAATGAATCTCTGACATCACGGTATGCCAATCTTTGTCAGGAAGCCATCAGATGTGCTGAGGAAGGGGCAATAGCTGTGGAAACTTATGAGGTTGCAGTAAGTGCTCTTAGAGAAGCTAGAAAAAAGATTGCTGTCATGAAGAGAAGTGTTGCCAAAGCTGTACCACCTAGTAATCCAGTCAGTGGGACTGCTCATGACAACAGGAAATCCCCTACTCCAACATCAGATACAACCCCTCTTTTATGGCCGCGACAAGATGAAACAAAGAGGTTTAATCTTAATGATGTTGGTGCTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGAATGGCCCCAGTGTCTCTTCACCAAGATGATGGTCCACATGAAAATATGGTGGTCCTTCCACGTCTGAAATCAATGACATGGGGAATGGAGAACACAAACTCAACTCCAGGGAATAGAGTAGCTAATATCAATCTTAAGGTCTCAAGAGTTACGTTGGAACCAATATTGAAGTCCATGACCCAGATCAGTGAACAGCTTTCAACAGCTCATAAGGTTGCTGTAATAAGTCTCAAGTACTGTAAAAGCAGAGATCAATGCAATTCTCTTCATAGTTCATATTAA 2001 0.4083 MDVQVINMGEGSDHRAMANGGDAEPSEGEVNNAGNSGSHVEVGVSEPYLGMKFDSEDAAKTFCNDYARRAGFSSKAGSLGQLKSDGTNMYWEFVCRGEDLKRKLTESCNAMIRIEKKGQSKWFVTKFVKEHNHSMVSHSKVNKLQPRKHFSSVGRTMPDTYQGVGLVPSGVMYISLDGNHMPTENIHGNRNNPAAATAETSHPVNIHGIRNNPAAATAETRYPVKNPISMNYTVSVKPPIQKRTLGRDARNLLDYFKKIQAENPETIEEFDSSWNSIISKYELGKNDWLQSLYSARAKWVPAYFRDSFLLQYEQALESWSQKEIEADFETICTSPVLKTPSPMEKQAADLYTRKIFLKFQEELVETFAYTANRFEEDGENSIFRVAKFEDDQKSYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGIGSDECAGESHGNESLTSRYANLCQEAIRCAEEGAIAVETYEVAVSALREARKKIAVMKRSVAKAVPPSNPVSGTAHDNRKSPTPTSDTTPLLWPRQDETKRFNLNDVGAPVQSVADLNLPRMAPVSLHQDDGPHENMVVLPRLKSMTWGMENTNSTPGNRVANINLKVSRVTLEPILKSMTQISEQLSTAHKVAVISLKYCKSRDQCNSLHSSY 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00079 666 Pfam FAR1 DNA-binding domain 62 136 IPR004330 -
Sebi45g00079 666 SMART 26again6 406 433 IPR006564 GO:0008270
Sebi45g00079 666 MobiDBLite consensus disorder prediction 515 544 - -
Sebi45g00079 666 MobiDBLite consensus disorder prediction 1 39 - -
Sebi45g00079 666 Pfam SWIM zinc finger 395 429 IPR007527 GO:0008270
Sebi45g00079 666 ProSiteProfiles Zinc finger SWIM-type profile. 395 431 IPR007527 GO:0008270
Sebi45g00079 666 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 35 507 IPR031052 GO:0006355
Sebi45g00079 666 MobiDBLite consensus disorder prediction 523 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi45g00079 Sebi-Chr45 1907392 1910378 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi45g00079 FAR1 3e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00079 - - gmx:100786516 566.614