Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00053 ATGGATTCGTTTGGGCCAAATGGGAACGAGGATTCTTTGCCACCACCACCTCCTGTTATCCCACCAGATGTTGAGCCAGCGAAAGCTGAAGAGGGGCTACCCCCTGAGCCAATTAAGAAAAAGCCTTCCCGTCTTCCAATAGCTAGGCGTGGTCTGGGGTCAAAGGGAACGAAGCTGCCCCTTCTCACTAACCACTTCAAAGTTAATGTTGCTAACAACGATGGGCATTTCTACCAGTATAGCGTATCTGTTTCTTATGAAGATGGACGCCCTGTTGAAGGTAAGGGTGTAGGGAGAAAGGTAATCGACAGGGTTCAAGAAACCTATGATTCCGAGCTTAATGGAAAGGACTTTGCCTATGACGGTGAAAAAACTTTGTTTACTATGGGCTCTCTTGCTCGCAACAAGCTTGAGTTTACTGTTGTTCTGGAGGATGTCACATCAAACAGGAATAATGGAAACTGCAGCCCTGACGGTAATGGAAGTCCAAATGACAATGACAGGAAGAGGATGAGACGCCCCTACCGCTCCAAGACATTTAAAGTTGAGATTAGCTTTGCTGCAAAAATTCCATTGCAGGCCATTGCCAATGCCTTACGTGGGCAGGAATCAGAGAATTACCAAGAAGCCATAAGAGTGCTTGATATTATATTGAGGCAACATGCTGCTAAACAAGGCTGTCTGCTTGTGCGCCAATCATTCTTCCACAATGATCCAAAGAATTTTGCTGATGTAGGAGGTGGTGTTCTCGGTTGCAGAGGCTTCCATTCCAGCTTTAGAACCACACAGAGTGGCCTGTCCCTAAACATAGATGTCTCTACCACCATGATAATTCAGCCTGGGCCTGTGGTTGACTTCTTAATTGCCAATCAAAATGTGAGAGATCCTTATTCCCTTGACTGGGCAAAGGCCAAGAGGACACTAAAAAATCTGAGGATCAAAACCAGCCCATCTAACCAAGAGTACAAAATTACAGGGCTCAGTGAACTCCCATGCAAAGAGCAAACGTTTACTCTGAAGAATAAAGGTGGAAGCAATGGGGATGCAACTGAACAGGAAATTACGGTTTATGATTATTTTGTTAATATTCGTAAGATAGATCTCCGGTACTCTGGTGATCTTCCATGTATCAATGTTGGCAAGCCAAAAAGGCCAACTTATGTTCCCCTTGAGCTTTGCTCTTTGGTTTCTTTGCAACGATATACAAAAGCACTGTCCACACTTCAAAGGGCTTCATTGGTGGAGAAGTCCAGGCAGAAGCCTCAAGAAAGGATGAGGGTTTTATCTGATGCTTTTAAAACCAGCAATTATGGCTCTGAACCCATGCTTCGCAATTGTGGAATTCAAATTAACTCTGGCTTTACTCAAGTTGAGGGTCGTGTTTTGCAAGCTCCAAGGTTGAAATTTGGCAATGGTGAGGATTTCAATCCTAGGAATGGGAGATGGAACTTTAATAACAAGAAAATAGTACAACCAGTGAAAATAGAAAGGTGGGCTGTTGCTAATTTCTCCGCACGCTGTGATGTAAGAGGGCTTGTCAGGGATCTTATTAGATGTGGAGAAATGAAAGGAGTTATGATAGACCAACCTTTTGATGTGTTTGAGGAAAATGGGCAGTTTAGGCGTGCCCCACCACTTGTTAGAGTTGAGAAAATTGGTTTCCTTTTGTGCTGA 1674 0.4397 MDSFGPNGNEDSLPPPPPVIPPDVEPAKAEEGLPPEPIKKKPSRLPIARRGLGSKGTKLPLLTNHFKVNVANNDGHFYQYSVSVSYEDGRPVEGKGVGRKVIDRVQETYDSELNGKDFAYDGEKTLFTMGSLARNKLEFTVVLEDVTSNRNNGNCSPDGNGSPNDNDRKRMRRPYRSKTFKVEISFAAKIPLQAIANALRGQESENYQEAIRVLDIILRQHAAKQGCLLVRQSFFHNDPKNFADVGGGVLGCRGFHSSFRTTQSGLSLNIDVSTTMIIQPGPVVDFLIANQNVRDPYSLDWAKAKRTLKNLRIKTSPSNQEYKITGLSELPCKEQTFTLKNKGGSNGDATEQEITVYDYFVNIRKIDLRYSGDLPCINVGKPKRPTYVPLELCSLVSLQRYTKALSTLQRASLVEKSRQKPQERMRVLSDAFKTSNYGSEPMLRNCGIQINSGFTQVEGRVLQAPRLKFGNGEDFNPRNGRWNFNNKKIVQPVKIERWAVANFSARCDVRGLVRDLIRCGEMKGVMIDQPFDVFEENGQFRRAPPLVRVEKIGFLLC 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00053 557 Gene3D paz domain 274 401 - -
Sebi45g00053 557 SUPERFAMILY PAZ domain 275 437 IPR036085 GO:0005515
Sebi45g00053 557 MobiDBLite consensus disorder prediction 1 52 - -
Sebi45g00053 557 Pfam Argonaute linker 1 domain 230 278 IPR014811 -
Sebi45g00053 557 ProSiteProfiles PAZ domain profile. 305 397 IPR003100 GO:0005515
Sebi45g00053 557 SMART DUF1785_2 228 280 IPR014811 -
Sebi45g00053 557 MobiDBLite consensus disorder prediction 10 24 - -
Sebi45g00053 557 Pfam PAZ domain 284 413 IPR003100 GO:0005515
Sebi45g00053 557 Gene3D - 461 551 - -
Sebi45g00053 557 FunFam Protein argonaute 7 275 401 - -
Sebi45g00053 557 Pfam Argonaute linker 2 domain 423 469 IPR032472 -
Sebi45g00053 557 Pfam N-terminal domain of argonaute 58 218 IPR032474 -
Sebi45g00053 557 CDD PAZ_argonaute_like 280 396 - -
Sebi45g00053 557 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 40 530 - -
Sebi45g00053 557 MobiDBLite consensus disorder prediction 150 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi45g00053 Sebi-Chr45 1496623 1500936 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi45g00053 49 525 Eukaryotic Initiation Factors Gene Family AT5G43810 31.161 2.24e-65 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00053 K11593 - gmx:100779439 958.747