Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00050 ATGGCCAAGAAGCGAAAGCTTCGATCCGACCCCGAGCCCGCCAAGCCTGTCGAAGAACCACCCCAACAAGACCAAGAGACACTGGAACTCGACCAACAACAACAACAACAGCAACAACAAACAGACCAGGAAGTAGAAGAACACCACAACATGGCTGTCGACGAAGACAACGCCCCAACACAGGAAGAAGAACAAGAAGATCAGCCTCAAAACGACGCCGAAGAACAAGTACAAGAAGGAGGACAAGAAGAGGAAGAGGAAGAGGAGGAAGAAGAGGAAGAAGAACAACAAGAACAAGAAACCCTAGAAGAAGAACGCCAACAAGAGCAAGAGCGTGGAGATGCACAAGCTTCAAACCCTGCTGCCACGTCAGAAGCAAATGGCAACAACAATAACGAAGAGGAAGACCTTGATTTGGAGGACGAGCCCGTGGAGAAGCTTCTCGAACCTTTCACGAGGGAGCAATTGCACTCTCTCGTGAAGCAAGCCGTCGAGAAACACCCTGATTTCGTCGAGAACGTTCGCCAGCTGGCTGACGTCGACCCCGCTCACCGGAAAATCTTCGTCCATGGCCTCGGTTGGGATGCCACCGCCGAAACCCTAACCGCCGTGTTCGGGAAGTACGGCGAGATCGAAGACTGCAAGGCTGTCACCGACAAGTTGTCAGGGAAATCGAAGGGCTATGCCTTCATCTTGTTCAAGCACAGAGACGGGGCTCGAAAGGCGCTGAAGAATCCACAGAAGAAGATTGGGAACCGAACTACGTCGTGTCAGTTGGCCTCCGCCGGACCTGTTCCGGCGCCGCCGCCTAATGCCCCGCCGGTTTCTGAGTACACACAGAGGAAGATCTTTGTGAGCAATGTGAATGCAGAGATTGATCCCCAGAGGCTGCTTGAGTTCTTCAAGCAGTTTGGGGAGGTGGAGGATGGTCCTCTTGGGCTTGATAAGCAAACTGGGAAGCCTAAAGGGTTTGCTCTCTTTGTTTACAAGTCAGTGGATAGTGCCAAGAAGGCTTTGGAAGAGCCACACAAAATTTTTGAGGGGCACACTTTGTATTGTCAGAAGGCTGTTGATGGTCCAAAAGGAAGTAAAGGGAAGGAGAAGAACAAGTATGGTGGCGGTGGTGGGCCATCACATGGTGGTGGTGGTGGTCACTTGATGGCGCCCTCAGGCCCTGCTGTAGGGGGTTTCAATCCAGGAGTACAGGCTCAAGGGTTGAATCCTGCACTTGGACAGGCTTTAACTGCTTTGCTTGCAAATCAAGGAGCTGCTGGGTTGGGGCTTGGGAATCTGCTTGGAGGTCTTGGCGGTGCACCGGTGAACCAGGCTGGGCCACCTGCTGCGTATGGTAATCAAGCTGCTATGAGCTATGGGAACCAACCAGGGATGCAACCGGGATACCAGAATCCTCAAATGGGGCAGAGCAGTGGTGTTAGACCTCACCCTGGTGCTGGTGCTCCTTACATGGGTCATTAG 1476 0.5285 MAKKRKLRSDPEPAKPVEEPPQQDQETLELDQQQQQQQQQTDQEVEEHHNMAVDEDNAPTQEEEQEDQPQNDAEEQVQEGGQEEEEEEEEEEEEEQQEQETLEEERQQEQERGDAQASNPAATSEANGNNNNEEEDLDLEDEPVEKLLEPFTREQLHSLVKQAVEKHPDFVENVRQLADVDPAHRKIFVHGLGWDATAETLTAVFGKYGEIEDCKAVTDKLSGKSKGYAFILFKHRDGARKALKNPQKKIGNRTTSCQLASAGPVPAPPPNAPPVSEYTQRKIFVSNVNAEIDPQRLLEFFKQFGEVEDGPLGLDKQTGKPKGFALFVYKSVDSAKKALEEPHKIFEGHTLYCQKAVDGPKGSKGKEKNKYGGGGGPSHGGGGGHLMAPSGPAVGGFNPGVQAQGLNPALGQALTALLANQGAAGLGLGNLLGGLGGAPVNQAGPPAAYGNQAAMSYGNQPGMQPGYQNPQMGQSSGVRPHPGAGAPYMGH 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00050 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 187 254 IPR000504 GO:0003723
Sebi45g00050 491 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Sebi45g00050 491 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 59 361 - -
Sebi45g00050 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 185 262 IPR000504 GO:0003723
Sebi45g00050 491 MobiDBLite consensus disorder prediction 460 476 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 57 102 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 460 491 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 42 56 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 1 19 - -
Sebi45g00050 491 SUPERFAMILY RNA-binding domain, RBD 173 264 IPR035979 GO:0003676
Sebi45g00050 491 Gene3D - 268 388 IPR012677 -
Sebi45g00050 491 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Sebi45g00050 491 SMART rrm1_1 282 354 IPR000504 GO:0003723
Sebi45g00050 491 SMART rrm1_1 186 258 IPR000504 GO:0003723
Sebi45g00050 491 MobiDBLite consensus disorder prediction 113 130 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 1 139 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 26 41 - -
Sebi45g00050 491 Coils Coil 70 112 - -
Sebi45g00050 491 MobiDBLite consensus disorder prediction 357 395 - -
Sebi45g00050 491 Gene3D - 77 265 IPR012677 -
Sebi45g00050 491 SUPERFAMILY RNA-binding domain, RBD 265 384 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi45g00050 Sebi-Chr45 1448574 1450124 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi45g00050 280 369 C2H2 Transcription Factor Family AT2G19380 32.222 6.32e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00050 K12741 - gmx:100783742 550.051