Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00017 ATGGCGACTATCAGCCTCCGGAAGGGGAACACACGGCTGCCGCCGGAGGTGAACCGCGTGCTGTACGTGAGGAACCTTCCGTTCAACATAACGAGCGAGGAGATGTACGACATATTCGGCAAGTACGGTGCAATCCGGCAGATCCGAATCGGCACGAACAAGGACACGCGCGGCACCGCCTTCGTTGTGTACGAGGACATCTACGACGCTAAAACCGCCGTCGACCACCTCTCCGGCTTCAACGTCGCCAACCGCTACCTCATCGTGCTGTATTACCAGCAGGCCAAGATGAGCAAGAAGTTCGACCAGAAGAAGAAGGAGGACGAAATCGCTTGCATGCAGGAGAAGTACGGCGTCTCCACCAAAGACAAGTAG 375 0.5653 MATISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEIACMQEKYGVSTKDK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00017 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Sebi45g00017 124 CDD RRM_SF3B14 17 93 IPR034150 -
Sebi45g00017 124 Gene3D - 5 110 IPR012677 -
Sebi45g00017 124 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
Sebi45g00017 124 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 107 - -
Sebi45g00017 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Sebi45g00017 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
Sebi45g00017 124 SUPERFAMILY RNA-binding domain, RBD 7 101 IPR035979 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi45g00017 7 105 Eukaryotic Initiation Factors Gene Family AT1G22760 29.245 6.79e-07 45.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00017 K12833 - gmx:100802877 244.588