Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi45g00016 ATGCCTCCCAAAGCAACAGCTTCCTATAGCACTGGGGGTAGTGCTGAAGGTGGTCGGGGAAGGGAAATATTGGTGCAGCATTTGTTGGTGAAAGAAGATGACCAGAAGCTACTTTTGGATCTTCTGCAGAGAATCTCTGCAGGTGAAGATTTGAGTGATCTTGCTGTGGAACATTCAATTTGCCCATCTAAAGAAGATGGAGGAATGCTTGGGTGGGTGAAAAAGGGGCAAATGGTTCCTGAATTTGAGGAGGCTGCATTTAGTGCAACTTTAAACAAAGTTGTAAGGTGCAAAACACAATTTGGATGGCACCTGCTGCAGGTTTTATCTGAAAGGGAAGAATCATTACTTCAAGACATTCAACCTGATGAGCTGCATGTGAAAATTCAAGATCCCAACTTTTTGGAGGAGACACAGTTAATTGATGTTCGAGAGCCTGAAGAAGTGGCCAAAGCATCTTTGCCAGGATTTACGGTTCTTCCCCTCAGACAATTTGGAAGCTGGGGGCCTGAAATAACTTCCAAATTTGACCCTCAAAAGGATACATATGTTATGTGTCATCATGGCGTGCGGTCATTACAGGTGGCCAAGTGGTTACAATCACAGGGTTTTAGGAAAGTATACAATCTTTCAGGGGGAATCCATGCCTATGCTGTCCAGTTTGTTCTCCCTTCCCTCCCACCATGGGCAATTGTTGCCTCAGGTGGCACTGATGACCCTGAGAACAAGGGAGAAACCAACCAACAACAGCATCAAGGCAGCAATGCAGGTGCAGACTCTGCCACCACCCCACCACCCTCATCATCAGCCAATGCATCCCATCCTCCTTCTAATAATAAGCATTCAAAACCAGCCCCTGTTGGTCCTGTTCTTGGTAGGCCAATGGAGGATGTCAAAGCCACTTACACAATGGGGAAGGAGCTAGGGAGAGGACAATTTGGTGTCACACATTTGTGCACACAAAAAAGCACAGGGAAGCAATATGCATGCAAAACAATAGCCAAGAGAAAGCTTGTGAATAAGGAGGACATAGAGGATGTAAGGAGGGAGGTTCAAATCATGCATCATCTCTCAGGGCAGGCTAATATTGTGGAACTTGTTGGTGCCTTTGAGGATAAACAATCTGTTCATTTGGTGATGGAGTTGTGTGCAGGGGGTGAGCTCTTTGATCGTATCATTGCCAAGGGACATTACACTGAACGTGCAGCAGCTTCTTTGATGAGAACCATAGATGAGAATGCACCCCTCAAGGCAACAGATTTTGGTCTATCAGTTTTTTACAAGCAAGGAGAGGTGTTTAAAGATATTGTTGGTAGTGCATATTACATTGCACCTGAGGTCTTGAAAAGGAAATATGGACCAGAAGTAGACATTTGGAGTATTGGAGTTATGTTATATATTCTCCTATGCGGTGTTCCACCATTTTGGGCAGAATCCGAAAATGGGATATTCAATGCTATCCTACGAGGCCATATTGACTTCACTAGCGATCCATGGCCCTCCATTTCACCTGCAGCAAAAGATCTTGTAAGGAGAATGTTGAATTCAGATCCAAAGCAGAGGCTAACAGCATACGAAGTTCTGAATCATCCATGGATCAAGGAGGATGGAGAAGCCCCAGATAAACCTCTTGACAATGCAGTGCTGAATAGGCTCAAACAGTTCAGAGCAATGAACCAATTCAAGAAAGTTGCTCTAAGGCTCAAGCAAGGGCTTGCAAAACAAGGAACCAAGTTGACAGAACAAGAAGTTAAGCAATTATTGGAAGCTGCGGATGCTGATGGTAATGGAACCATAGATTACGATGAGTTTATCACAGCAACAATGCACATGAACCGAATGAACAGAGAAGAACATCTTTATACTGCCTTCCAATACTTCGATAAAGATAATAGCGGGTACATTACCATTGAAGAACTAGAGCAAGCACTCCATGAGTTTAACATGCATGACGGCAGGGACATGAAGGAAATCATTTCAGAAGTCGATGCAGATAATGATGGCCGAATCAACTATGATGAGTTTGTTGCAATGATGAGCAAAGGAAACCCTGAAGCTCATACCAAGAAAAGGCGTGATTCAACCTTGTATTAG 2094 0.4394 MPPKATASYSTGGSAEGGRGREILVQHLLVKEDDQKLLLDLLQRISAGEDLSDLAVEHSICPSKEDGGMLGWVKKGQMVPEFEEAAFSATLNKVVRCKTQFGWHLLQVLSEREESLLQDIQPDELHVKIQDPNFLEETQLIDVREPEEVAKASLPGFTVLPLRQFGSWGPEITSKFDPQKDTYVMCHHGVRSLQVAKWLQSQGFRKVYNLSGGIHAYAVQFVLPSLPPWAIVASGGTDDPENKGETNQQQHQGSNAGADSATTPPPSSSANASHPPSNNKHSKPAPVGPVLGRPMEDVKATYTMGKELGRGQFGVTHLCTQKSTGKQYACKTIAKRKLVNKEDIEDVRREVQIMHHLSGQANIVELVGAFEDKQSVHLVMELCAGGELFDRIIAKGHYTERAAASLMRTIDENAPLKATDFGLSVFYKQGEVFKDIVGSAYYIAPEVLKRKYGPEVDIWSIGVMLYILLCGVPPFWAESENGIFNAILRGHIDFTSDPWPSISPAAKDLVRRMLNSDPKQRLTAYEVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALRLKQGLAKQGTKLTEQEVKQLLEAADADGNGTIDYDEFITATMHMNRMNREEHLYTAFQYFDKDNSGYITIEELEQALHEFNMHDGRDMKEIISEVDADNDGRINYDEFVAMMSKGNPEAHTKKRRDSTLY 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi45g00016 697 Gene3D - 19 113 IPR046357 GO:0003755
Sebi45g00016 697 Pfam Protein tyrosine and serine/threonine kinase 303 395 IPR001245 GO:0004672|GO:0006468
Sebi45g00016 697 CDD STKc_CAMK 302 532 - -
Sebi45g00016 697 Gene3D - 114 255 IPR036873 -
Sebi45g00016 697 MobiDBLite consensus disorder prediction 240 280 - -
Sebi45g00016 697 Pfam PPIC-type PPIASE domain 31 110 - -
Sebi45g00016 697 Gene3D - 572 616 - -
Sebi45g00016 697 ProSiteProfiles Rhodanese domain profile. 134 219 IPR001763 -
Sebi45g00016 697 ProSiteProfiles EF-hand calcium-binding domain profile. 615 650 IPR002048 GO:0005509
Sebi45g00016 697 Gene3D - 617 696 - -
Sebi45g00016 697 ProSiteProfiles EF-hand calcium-binding domain profile. 579 614 IPR002048 GO:0005509
Sebi45g00016 697 Pfam EF-hand domain pair 576 606 IPR002048 GO:0005509
Sebi45g00016 697 ProSiteProfiles PpiC-type peptidyl-prolyl cis-trans isomerase family profile. 20 110 IPR000297 GO:0003755
Sebi45g00016 697 ProSitePatterns EF-hand calcium-binding domain. 663 675 IPR018247 -
Sebi45g00016 697 Pfam EF-hand domain pair 617 680 IPR002048 GO:0005509
Sebi45g00016 697 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 117 220 IPR036873 -
Sebi45g00016 697 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 220 - -
Sebi45g00016 697 Pfam Protein kinase domain 410 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi45g00016 697 SMART efh_1 619 647 IPR002048 GO:0005509
Sebi45g00016 697 SMART efh_1 583 611 IPR002048 GO:0005509
Sebi45g00016 697 SMART efh_1 654 682 IPR002048 GO:0005509
Sebi45g00016 697 SUPERFAMILY FKBP-like 20 109 - -
Sebi45g00016 697 ProSiteProfiles Protein kinase domain profile. 302 533 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi45g00016 697 SUPERFAMILY Protein kinase-like (PK-like) 279 561 IPR011009 -
Sebi45g00016 697 SMART rhod_4 120 223 IPR001763 -
Sebi45g00016 697 FunFam Calcium-dependent protein kinase SK5 443 538 - -
Sebi45g00016 697 ProSitePatterns EF-hand calcium-binding domain. 592 604 IPR018247 -
Sebi45g00016 697 MobiDBLite consensus disorder prediction 233 293 - -
Sebi45g00016 697 Gene3D Phosphorylase Kinase; domain 1 304 388 - -
Sebi45g00016 697 Pfam Rhodanese-like domain 128 218 IPR001763 -
Sebi45g00016 697 SUPERFAMILY EF-hand 568 680 IPR011992 -
Sebi45g00016 697 Gene3D Transferase(Phosphotransferase) domain 1 389 571 - -
Sebi45g00016 697 ProSiteProfiles EF-hand calcium-binding domain profile. 654 685 IPR002048 GO:0005509
Sebi45g00016 697 FunFam Calcium-dependent protein kinase 1 304 387 - -
Sebi45g00016 697 FunFam Calmodulin 1 560 682 - -
Sebi45g00016 697 ProSitePatterns Protein kinases ATP-binding region signature. 308 335 IPR017441 GO:0005524
Sebi45g00016 697 CDD EFh 583 680 IPR002048 GO:0005509
Sebi45g00016 697 ProSitePatterns EF-hand calcium-binding domain. 628 640 IPR018247 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi45g00016 Sebi-Chr45 438156 447004 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi45g00016 232 696 EF-hand Containing Proteins AT5G12180 70.095 0.0 742
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi45g00016 Pkinase 7.1e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi45g00016 K13412 - qsa:O6P43_020973 755.362