Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi459g00040 ATGAGAATAACACTCGATCCACATTATTCATCGAAAGATAATGAATTGTCACCATGTTCTGATGTTGGTAGTTCCAAACGTGGGAGCAAAAAACCTGAACGTTACTTAGGTTTTGAGGATGATGATGATTCCGAGGAGGAAGCTGGTCTTTTTGCATTGCCATCCGAAGAGTCAGAGCAGGAACACTGTCTAACACAGAATGCTGTTGATGATTCTGAGGTAGAAGTTAGTCTCCTTCCATCCATTCTCTACGAGAAACACAGAGAGTTGAACTCAAAACAGAGTACTGTTGTTCTTGCTCTTCCTGCTTATAACATTAATCGACCCTGGCCATTCCAGAAACGGAAAGAGCCTAAGCGAAAATGCTATAAAAAACCTGTTGTTGTTCTTGCTCTTCCTTCTTCTGCTGACATGTTCAGTAATCTAAAGAATAGAAGAAGGAGTATGGTAGCAAAGAGAGCAAACCAAGGTGATGACATATCTCTGAGTAATCAAAAAGGGAATGATATTCGAATGTTGGCGGCTTATGCGCAAGATAATCCTCCCTTTGGTTGTGCAAAAGAGAATGAGATTGATGATTTTTCAAGACTGTGTGAATATTGCAGGGACAATACAACCACACTTATGGAAGCAAAATCTGAAAGAAGAGGTGGTTGTGTGATATCACATACTCCTGGAGCGGGAAAAACCTTTCTTGTTATTGCCTTTCTTGTTAGCTACTTAAAGCTATTCCCAGATAAAAAGCCTTTGATCCTTGCTCCAAAAACTACACTATATACTTGGTACAAGGAATTCAGCAAGTGGGAGATTCCTATTCCAGTGTATCTGATACGCGATCGTAAAAAGCTTAGAGACTTTGGTGAAACACCATTGACTATTCCTGGAGTTCCAAACCCTTCTAATGATGTCAAACATGTTTTGGATTGCCTTCAAAAGATTAAAAAGTGGCATCTACACTCCAGTGTTCTGGTCATGGGGTATACTTCATTTTTATCACTAACAAGAGAGAATTCAAAGTATGAACACAAGAAGTATATGGCTAAAGCTTTGAGAGAAAGCACTGGGATCCTGATACTCGATGAAGGGCACAATCCTAGAAGCACCAAGTCAAGGTTGAGGATAGAGTTGATGAAAGTAGAGACAGAACTGAGAATATTACTCTCAGGCACATTGTTTCAGAATAATTTTGGTGAATACTTCAACACACTTTGCTTGGCAAGGCCGAAGTTTGTTCAAGAAGTGCTGAAAGAATTAGATACAAAACAAAAGAAGGGAAATGATAAAATTCCAGAGAATGCAAAACATTTTCTTGAGACACGTGCTAGGAAATTCTTCCTAGATGACATTGCTAACAAAATTGACTCAAGTGATGATGAAGTGAGGATGCGGGGTTTGAACATGTTGAGGAAAATGACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTTTGAAAATCTTCCTGGTTTGGAAATTTATACTCTGGTTATGAACCTAACTGATGTGCAGAATGAGCTTTTGCAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCCTTTGGAGGGAGAGCTTATGGTAACCCTTGGATCAATACATCCATGGTTGATCAAAACAGCAACAAGTTCGAATAAGTTTTACACTTCACAAGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGTTCTTATCTTTTGCCGCAACCTTGCACCTATGAAGCTTTTAGCACAATTGTTTGAGGAGTGCTTCAATTGGAAAAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACCTGTTTGAAAGAGGGAATGTGATTGATAATTTTGAGGATCGATATGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATATTTTTGGACTCGGAGTGGAATCCATCGAAGATAAAGCAGGCTATTGCAAGGGCTTTTCGTCCTGGCCAGGAAAAGATGGTTTATGTTTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACCACTTGGAAAGAGTGGGTTTCCAACATGATTTTTAGTGAGGATTTTTCGGAGAACCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 2298 0.3925 MRITLDPHYSSKDNELSPCSDVGSSKRGSKKPERYLGFEDDDDSEEEAGLFALPSEESEQEHCLTQNAVDDSEVEVSLLPSILYEKHRELNSKQSTVVLALPAYNINRPWPFQKRKEPKRKCYKKPVVVLALPSSADMFSNLKNRRRSMVAKRANQGDDISLSNQKGNDIRMLAAYAQDNPPFGCAKENEIDDFSRLCEYCRDNTTTLMEAKSERRGGCVISHTPGAGKTFLVIAFLVSYLKLFPDKKPLILAPKTTLYTWYKEFSKWEIPIPVYLIRDRKKLRDFGETPLTIPGVPNPSNDVKHVLDCLQKIKKWHLHSSVLVMGYTSFLSLTRENSKYEHKKYMAKALRESTGILILDEGHNPRSTKSRLRIELMKVETELRILLSGTLFQNNFGEYFNTLCLARPKFVQEVLKELDTKQKKGNDKIPENAKHFLETRARKFFLDDIANKIDSSDDEVRMRGLNMLRKMTSGFIDVYESGNFENLPGLEIYTLVMNLTDVQNELLQKLQKKMVGSSVFPLEGELMVTLGSIHPWLIKTATSSNKFYTSQELNQLEKFKSDFKVGSKVRFILSLIIRVVKEEKVLIFCRNLAPMKLLAQLFEECFNWKKGREILLLYGEQDLFERGNVIDNFEDRYGVSKVLLASITACAEGISLTAASRLIFLDSEWNPSKIKQAIARAFRPGQEKMVYVYQLLAKGSMEEDKYRRTTWKEWVSNMIFSEDFSENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKASTN 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi459g00040 765 Gene3D - 197 446 IPR038718 -
Sebi459g00040 765 SMART helicmild6 596 685 IPR001650 -
Sebi459g00040 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 746 IPR027417 -
Sebi459g00040 765 SMART ultradead3 193 421 IPR014001 -
Sebi459g00040 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 210 411 IPR027417 -
Sebi459g00040 765 MobiDBLite consensus disorder prediction 10 24 - -
Sebi459g00040 765 CDD SF2_C_SNF 560 696 - -
Sebi459g00040 765 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 211 764 IPR044567 GO:0080188
Sebi459g00040 765 Pfam SNF2-related domain 209 510 IPR000330 GO:0005524|GO:0140658
Sebi459g00040 765 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 571 732 IPR001650 -
Sebi459g00040 765 Pfam Helicase conserved C-terminal domain 568 684 IPR001650 -
Sebi459g00040 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 409 IPR014001 -
Sebi459g00040 765 MobiDBLite consensus disorder prediction 1 45 - -
Sebi459g00040 765 Gene3D - 488 765 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi459g00040 Sebi-Chr459 832359 835781 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi459g00040 611 703 RAD5 or RAD16-like Gene Family AT5G05130 40.426 2.06e-10 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi459g00040 SNF2_N 4e-16 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi459g00040 K10875 - qsa:O6P43_013801 822.772