Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi459g00039 ATGAATGATGCAATAATAGAAAATTATCTTATGGAAGAAACAGAGGTACAACCACGCCAAGGAAGGCGTTACCAAGGGGAGGAGCAATGCAATGGAGATTCCAAGCCCGAGCTCAAGCCAAAGGATAAGGATAAGGAAGATGATGATTCTCATGCTTTTACAATGAATGCTTCTCATTATGAGCCTTTATCTATAGAAAATGACAATGTTTGGTCATTGATTCCTGAGCTCAGGTTGGACATGTTGAGGAAAATCACAAGTGGTTTTATAGATGTTTATGAGAGTGGGAATTCTGAAAAGATTCCTGGTTTGCAAATTTATACTCTGGTTATGAACCTAACTGATGTGCAGAATGAGCTTTTTCAGAAACTACAAAAGAAAATGGTTGGGTCAAGCGTGTTCCTTTTGGAGGGACAACTTATGGAACTAAACCAGCTAGAGAAGTTCAAGTCTGATTTCAAGGTAGGGTCAAAAGTGAGATTTATTTTGAGCCTTATCATTCGTGTTGTCAAGGAGGAGAAGGGTAGAGAAATTTTGTTACTTTATGGGGAACAAGACTTGTTTGAAAGAGGGAAAGTGATTGATAAGTTTGAGGATCCATGTGGAGTTTCAAAGGTACTCCTTGCTTCAATTACAGCTTATGCTGAAGGTATTAGTCTTACTGCAGCTTCTCGGTTGATAATTTTGGACTCGGAGTGGAATCCATCAAAGATAAAGCATGCTATTGCAAGGGATTTTCGTCCTGGCCAGGAAAATATGGTTTATGTGTATCAACTCTTGGCAAAAGGCTCAATGGAGGAAGATAAGTACCGCAGAACGATTTGGAAAGAGTGGATTTCCAACATGATTTTCAGTGAGGATTTTCTAGAGAATCCTTCCCAGTGGCAAGCAGAGAAGATTGAAGATGATATACTAAGGGAAATGGTTGAGAATGACAATCCTAAAGCAATCCATATGATTATGAAGAATGAAAAAGCTTCAACAAACTGA 990 0.3879 MNDAIIENYLMEETEVQPRQGRRYQGEEQCNGDSKPELKPKDKDKEDDDSHAFTMNASHYEPLSIENDNVWSLIPELRLDMLRKITSGFIDVYESGNSEKIPGLQIYTLVMNLTDVQNELFQKLQKKMVGSSVFLLEGQLMELNQLEKFKSDFKVGSKVRFILSLIIRVVKEEKGREILLLYGEQDLFERGKVIDKFEDPCGVSKVLLASITAYAEGISLTAASRLIILDSEWNPSKIKHAIARDFRPGQENMVYVYQLLAKGSMEEDKYRRTIWKEWISNMIFSEDFLENPSQWQAEKIEDDILREMVENDNPKAIHMIMKNEKASTN 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi459g00039 329 Gene3D - 106 325 IPR027417 -
Sebi459g00039 329 Pfam Helicase conserved C-terminal domain 167 247 IPR001650 -
Sebi459g00039 329 CDD SF2_C_SNF 150 260 - -
Sebi459g00039 329 MobiDBLite consensus disorder prediction 12 50 - -
Sebi459g00039 329 MobiDBLite consensus disorder prediction 16 50 - -
Sebi459g00039 329 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 108 296 IPR001650 -
Sebi459g00039 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 101 311 IPR027417 -
Sebi459g00039 329 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 79 328 IPR044567 GO:0080188
Sebi459g00039 329 SMART helicmild6 165 249 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi459g00039 Sebi-Chr459 816168 818571 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi459g00039 155 267 RAD5 or RAD16-like Gene Family AT5G05130 37.719 1.45e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi459g00039 K10875 - gmx:100811703 328.946