Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi459g00020 ATGTTTTGTGTTTCACCAAGACAAAGTAGCACAATGGAGCAGCCACAGCTCTTAGTGGATGAAAACTTCCCTCTCTTCAAATCAACCCGCAAACCCTCAAAAAACCCCTCACCCTCCGCCGTCAACAACAATCCTAACTCCGATGCCAAACACTCAGAAGCCACCGTCAATAAAACCCCTAATTTTGATGCCGAAAACTTCAAAGACACTGCCCCAGCCACGACGTTCGCTGATCTTGGACTGGCAGAATGGGCGGTGCAGACATGCAAGGCGCTCAGAATGCAGGTGCCGCGGCGCGTGCAGTGGCAGTGCATCCCAAGGGTCCTGGAGGGCCGCCACGTACTCGGCATCGACGAGACTGGCAGCGGAAAAACGGCGGCATTTGCCCTCCCCATCCTGCATCGCCTCGCTGAGCACCCGTTTGGCGTGTTCGCCCTTGTGGTGACTCCCACACGCGAGCTTGCCTTCCAGCTTGCCGAGCAGTTCCGCGCCCTCGGCTCCTCCATCCGCCTCCGCATTGCCGTGGTGGTTGGCGGGATGGACATGCTCAAACAGGCCCAGGACTTGATCGACAGGCCTCACATTGTCATCGCCACCCCCGGGAGAATCAAGCTCTTGCTTGAGGATAATCCTGATATCCCTCCTATTTTCTCTAGGATTAAGTTCGTTGTCTTGGATGAAGCAGATCAAGTCCTTGATGTTGATTTTCAGGAGGAATTGAAATTTATCTTTCAATGCTTACCTGTAAATCGGCAAAACCTGTTCTTTTCCGCAACAACAACACATAATCTGCAAAAGTTGCGTGAACGTTACCAGGATAAGCTGTATGTCTACGAGGCATATGAAGGCTTGAAAACAGTTGAAACCCTTAAGCAACAAGTTATATTCATCCCTAAAAAGGTGAAGGATGTATATTTGATGCATATCTTGTCTAAAATGGAAGAAATGGGCATTCGGTCTGCCATTGTATTTACCAACACACGCAGAGATTGTCATCGTTTAAGTTTAATGCTGGAAGTGCTTGATCAAGAAGCTGCAGCTCTATATTCATACAAAACTCAGGTTCAGAGGCTCGAGGCACTCAATCAATTTAAATCAGGAAAGGTTTCTGTACTACTTACAACTGATGTTGCCTGCCGTGGTTTGGATATTCCTACAGTTGACCTTGTTATCAATTATGATGTTCCAAGCATTCCACGGAATTATATTCATCGTGTAGGTCGTACTGCAAGAGCGGGTAGAGGAGGACTGGCTTTGAGCCTCGTCACCCAGAATGATGTTGATCTCATTCATGAAATAGAGACTCTTATTGAAAGGCAACTTGAAATGATTGAATACAAAGAAAATGAGGTGCTTTCTCTCATGAAAAAGGTTTTCAGTGCTAAGAATGTAGCAGAAATGAAGATGATGGATGATGGGTTTGAGGAGAAAGAAAAAAAACGTAAAAAACAAAAAATGAAAATGCTAGCAGAGAAAGGGTTGTTAAAGAAAAGAAGTAAAAAGAGAAAAATAAATAAAGATTTTGCAGAGAAAGGAAAACAACAGAAAAAAGAGGAAGTGGGAGCATTTGAAGATACTGCAGCACAAAAGATAAGGAGACGAGGGAATAAGAGGAAGTCAGGAAGAGATAAATATTTGAATTAA 1644 0.4501 MFCVSPRQSSTMEQPQLLVDENFPLFKSTRKPSKNPSPSAVNNNPNSDAKHSEATVNKTPNFDAENFKDTAPATTFADLGLAEWAVQTCKALRMQVPRRVQWQCIPRVLEGRHVLGIDETGSGKTAAFALPILHRLAEHPFGVFALVVTPTRELAFQLAEQFRALGSSIRLRIAVVVGGMDMLKQAQDLIDRPHIVIATPGRIKLLLEDNPDIPPIFSRIKFVVLDEADQVLDVDFQEELKFIFQCLPVNRQNLFFSATTTHNLQKLRERYQDKLYVYEAYEGLKTVETLKQQVIFIPKKVKDVYLMHILSKMEEMGIRSAIVFTNTRRDCHRLSLMLEVLDQEAAALYSYKTQVQRLEALNQFKSGKVSVLLTTDVACRGLDIPTVDLVINYDVPSIPRNYIHRVGRTARAGRGGLALSLVTQNDVDLIHEIETLIERQLEMIEYKENEVLSLMKKVFSAKNVAEMKMMDDGFEEKEKKRKKQKMKMLAEKGLLKKRSKKRKINKDFAEKGKQQKKEEVGAFEDTAAQKIRRRGNKRKSGRDKYLN 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi459g00020 547 MobiDBLite consensus disorder prediction 1 17 - -
Sebi459g00020 547 MobiDBLite consensus disorder prediction 1 54 - -
Sebi459g00020 547 Coils Coil 546 547 - -
Sebi459g00020 547 CDD SF2_C_DEAD 290 422 - -
Sebi459g00020 547 SMART helicmild6 332 413 IPR001650 -
Sebi459g00020 547 Gene3D - 40 277 IPR027417 -
Sebi459g00020 547 CDD DEADc_DDX49 76 279 - -
Sebi459g00020 547 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 64 543 - -
Sebi459g00020 547 Pfam DEAD/DEAH box helicase 99 267 IPR011545 GO:0003676|GO:0005524
Sebi459g00020 547 SMART ultradead3 93 293 IPR014001 -
Sebi459g00020 547 MobiDBLite consensus disorder prediction 28 54 - -
Sebi459g00020 547 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 142 433 IPR027417 -
Sebi459g00020 547 Gene3D - 278 452 IPR027417 -
Sebi459g00020 547 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 305 452 IPR001650 -
Sebi459g00020 547 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 105 278 IPR014001 -
Sebi459g00020 547 MobiDBLite consensus disorder prediction 505 531 - -
Sebi459g00020 547 MobiDBLite consensus disorder prediction 474 547 - -
Sebi459g00020 547 Pfam Helicase conserved C-terminal domain 306 413 IPR001650 -
Sebi459g00020 547 MobiDBLite consensus disorder prediction 474 493 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi459g00020 Sebi-Chr459 470782 476076 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi459g00020 72 442 Eukaryotic Initiation Factors Gene Family AT3G19760 28.763 1.21e-51 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi459g00020 K14778 - gmx:100804060 729.554