Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi459g00015 ATGCCTGCAAGGCTAGAGGCGCTGACCTCAGAGTGCATTTCAAGTAAGGATATCAGGGAACCTGAAGAAAAAGCAGGGAATACTAGGGAGACTGCACATGCCATCAGGAAGTTGCCCCTGGTAAAAGCTAAAAGATACTTGGAAGATGTTTTGGCCCACAAGCAGGCCATTCCTTTCCGCCGCTTCTGTCGTGGTGTTGGGAGGACAGCCCAGGCTAAGAATAGACATTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAGATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTCTACGTTTCTCATATCCAGGTTAACCAGGCACAGAAACAAAGACGTCGCACCTACCGAGCTCATGGAAGAATCAACCCATACATGTCATCTCCTTGCCACATTGAGCTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCTCAAGCTCTTCGAAGCGGTGCTTCATCATAA 546 0.4744 MPARLEALTSECISSKDIREPEEKAGNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi459g00015 181 ProSitePatterns Ribosomal protein L22 signature. 126 150 IPR018260 GO:0003735|GO:0005840|GO:0006412
Sebi459g00015 181 MobiDBLite consensus disorder prediction 153 181 - -
Sebi459g00015 181 SUPERFAMILY Ribosomal protein L22 25 153 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sebi459g00015 181 NCBIfam 50S ribosomal protein L22 27 153 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sebi459g00015 181 CDD Ribosomal_L22 27 150 IPR001063 GO:0003735|GO:0005840|GO:0006412
Sebi459g00015 181 FunFam 60S ribosomal protein L17 7 174 - -
Sebi459g00015 181 PANTHER 60S RIBOSOMAL PROTEIN L17 25 174 IPR005721 GO:0003735|GO:0006412|GO:0015934
Sebi459g00015 181 MobiDBLite consensus disorder prediction 167 181 - -
Sebi459g00015 181 Gene3D Ribosomal protein L22/L17 13 180 IPR036394 GO:0003735|GO:0005840|GO:0006412
Sebi459g00015 181 Pfam Ribosomal protein L22p/L17e 27 151 IPR001063 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi459g00015 Sebi-Chr459 379585 381597 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi459g00015 27 181 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 87.742 2.25e-99 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi459g00015 K02880 - jre:109003161 288.885