LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi459g00015	ATGCCTGCAAGGCTAGAGGCGCTGACCTCAGAGTGCATTTCAAGTAAGGATATCAGGGAACCTGAAGAAAAAGCAGGGAATACTAGGGAGACTGCACATGCCATCAGGAAGTTGCCCCTGGTAAAAGCTAAAAGATACTTGGAAGATGTTTTGGCCCACAAGCAGGCCATTCCTTTCCGCCGCTTCTGTCGTGGTGTTGGGAGGACAGCCCAGGCTAAGAATAGACATTCTAATGGGCAAGGACGCTGGCCTGTCAAGTCAGCTAGATTCATCCTAGATTTGCTTAAGAATGCTGAGAGTAATGCTGAAGTGAAAGGTTTGGATGTCGATGCTCTCTACGTTTCTCATATCCAGGTTAACCAGGCACAGAAACAAAGACGTCGCACCTACCGAGCTCATGGAAGAATCAACCCATACATGTCATCTCCTTGCCACATTGAGCTGATATTATCTGAAAAGGAAGAGCCTGTCAAGAAAGAGCCTGAGACCCAGTTGGCAACAAGCAAGAAGAAGTCTCAAGCTCTTCGAAGCGGTGCTTCATCATAA	546	0.4744	MPARLEALTSECISSKDIREPEEKAGNTRETAHAIRKLPLVKAKRYLEDVLAHKQAIPFRRFCRGVGRTAQAKNRHSNGQGRWPVKSARFILDLLKNAESNAEVKGLDVDALYVSHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELILSEKEEPVKKEPETQLATSKKKSQALRSGASS	181

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi459g00015	181	ProSitePatterns	Ribosomal protein L22 signature.	126	150	IPR018260	GO:0003735\|GO:0005840\|GO:0006412
	Sebi459g00015	181	MobiDBLite	consensus disorder prediction	153	181	-	-
	Sebi459g00015	181	SUPERFAMILY	Ribosomal protein L22	25	153	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Sebi459g00015	181	NCBIfam	50S ribosomal protein L22	27	153	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Sebi459g00015	181	CDD	Ribosomal_L22	27	150	IPR001063	GO:0003735\|GO:0005840\|GO:0006412
	Sebi459g00015	181	FunFam	60S ribosomal protein L17	7	174	-	-
	Sebi459g00015	181	PANTHER	60S RIBOSOMAL PROTEIN L17	25	174	IPR005721	GO:0003735\|GO:0006412\|GO:0015934
	Sebi459g00015	181	MobiDBLite	consensus disorder prediction	167	181	-	-
	Sebi459g00015	181	Gene3D	Ribosomal protein L22/L17	13	180	IPR036394	GO:0003735\|GO:0005840\|GO:0006412
	Sebi459g00015	181	Pfam	Ribosomal protein L22p/L17e	27	151	IPR001063	GO:0003735\|GO:0005840\|GO:0006412

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi459g00015	Sebi-Chr459	379585	381597	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi459g00015	27	181	Cytoplasmic Ribosomal Protein Gene Family	AT1G27400	87.742	2.25e-99	283

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi459g00015	K02880		-	jre:109003161	288.885

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