Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi459g00005 ATGGATGTTGCTGAGGTTGAAGAAAATTTGTTTGCAGCCAGTGATGCAAAGTACTGTGTACTAAAAAAGAAAGTGCTTAGAAAATGCAAAGTCCTTAATCCTTATGCTCAGTTACATGGAGAAATGTGCAAGGGTCTTTCTGCAATATATTGCAAAATATTGTCTATATTTCCCTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGTTCATTGCATGTAGCCTTAGAGAAGGCAAAGAATGTTCTTCAACACTGCTCAGAGTGTAGCAAACTTTACTTGGCTATAACTGGGGATTCCGTTCTTCTAAAATTTGAGAAGGCTAAATGTGCTCTTATAGATAGTCTTAAGTTGGTGGAAGATATTGTTCCTCAATCTATTGGGTGTCAGGTTCATGATCCTATTCAGTTATGTGAAGGATCTTCCTCAGCCTTGCTAATTATTGATGAAATTGTCAATGAACTTGCTAGTACGGTATTTGCACTTGACCCATCAGAGAAGCAAGTCGGGGATGATTTAATTGCATTGCTTCAGCAGGGGAGAAAGTTTAATGACTCCAATGACAATAATGAACTTGAGTGTTTTCATCTAGCTGCTACTAGACTTGGAATCACATCTTCAAGAGCAGCTCTTACTGAACGAAGAGCTCTAAAAAAACTCATTGAAAGGGCTCGAGCTGAGGAAGACAAGCGGAAGGAATCAATTATTGCATATCTTTTTCACCTTATGAGGAAATACTCCAAGTTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCATAGACCTCTTGAGGACTTTGTTCCTGGTGGTCATTGTCAGGCCTTCGATAGACAGCTTTCAAAACTTAGTTCCTTTAATTTCAAGCCAAATAATAGGAGATCAGGGCAGATGCCCCTTCCACCTGAAGAGTTGAGGTGTCCGATATCTCTGCAGCTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGTTATGTATAGAAAAATGGTTCAGTGATGGGCACAACACCTGCCCAAAGACTCAACAGAAACTTGATCATCTTAGTTTGACTCCTAATTACAGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAATTCCTATTCCTGAAGGCCCTCCCGAATCTCTTGATTTCAACTACTGGAGATTGGCATTATCGGATTCTGAATCCACAAATTCAAGATCTGTAAACAGTGTCAACTCTTGCAAATTAAAGGGTGTCAAAGTTGTTCCTCTAGAAGAGAGTGGTATCTCAGAGCAAACAGGGGGGAATGCAGCTGAAAGTTTGTCAGCACAAGAGGAAGACAATGAGCAGTATTTTAGTTTTCTGAAAGTATTGACTGAAGTGAATAATTGGAAGAGGAAGTGTAAAGTGGTAGAACGGTTAAGGCTGCTGCTGCGGGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGAAGCACTTATGCAGTTTCTGCAATCAGCTGTGCGTGAAGGGAATGTGATGGCCCAGGAAAGTGGAGCTATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGATATCAGCAGGAGTTTTATCCTTGTTGGAGGAAATGATTTCAGACACAAGTTCATATGGTTGTGCAACTGCCCTGTATCTGAACCTTTCTTGCCTTGAAGAAGCCAAGCAGATCATTGGCACGAGTCCTCAGGCTGTCCAGTTCCTCATCCAGATTCTTCAAGCTAAAACTGAAGTCCAGTGCAAGCTAGATTCCCTCCATGCCCTCTATAATCTTTCTACTGTGCCCCCCAATATTCCAAACCTCCTTTCATGTGGCATCATTAATGGCCTACAATCCCTTCTTGTAGGCCAGGATGATTGCATGTGGATAGAAAAATGCATAGCTGTTTTGATAAATTTGGCTGTTTCCCAAGTGGGAAGAGAGGAAATTATGTTGACTCCTGGACTCATAGGCACATTGGCTTCGATACTGGACACCGGTGAGCTCCTAGAGCAGGAGCAAGCTGTCTCTTGTCTCCTAATTTTATGTAACAGGAGTGAGAAGTGTTGTGAGATGGTCCTGCAAGAAGGGGTTATACCTGCATTGGTGTCAATATCAGTAAATGGAACATCAAGAGGAAGAGAAAAAGCTCAGAAACTCTTGATGCTCTTCCGGGAGCAGCGACAGCGAGAACGGGACCAATCACCGGCTAAGACAATTCAATGCCAGCCTGAAACTAGTGATTTGTCCAAGCCTCCTCCTGAAACAAAACCTCTATGTAAAACAACATCTAGAAAAAAGGTGGGAAAAGCTTTTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2415 0.417 MDVAEVEENLFAASDAKYCVLKKKVLRKCKVLNPYAQLHGEMCKGLSAIYCKILSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALIDSLKLVEDIVPQSIGCQVHDPIQLCEGSSSALLIIDEIVNELASTVFALDPSEKQVGDDLIALLQQGRKFNDSNDNNELECFHLAATRLGITSSRAALTERRALKKLIERARAEEDKRKESIIAYLFHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVHRPLEDFVPGGHCQAFDRQLSKLSSFNFKPNNRRSGQMPLPPEELRCPISLQLMSDPVIIASGQTYERLCIEKWFSDGHNTCPKTQQKLDHLSLTPNYSVKGLVASWCEQNGIPIPEGPPESLDFNYWRLALSDSESTNSRSVNSVNSCKLKGVKVVPLEESGISEQTGGNAAESLSAQEEDNEQYFSFLKVLTEVNNWKRKCKVVERLRLLLRDDEEARIFMGANGFVEALMQFLQSAVREGNVMAQESGAMALFNLAVNNNRNKEIMISAGVLSLLEEMISDTSSYGCATALYLNLSCLEEAKQIIGTSPQAVQFLIQILQAKTEVQCKLDSLHALYNLSTVPPNIPNLLSCGIINGLQSLLVGQDDCMWIEKCIAVLINLAVSQVGREEIMLTPGLIGTLASILDTGELLEQEQAVSCLLILCNRSEKCCEMVLQEGVIPALVSISVNGTSRGREKAQKLLMLFREQRQRERDQSPAKTIQCQPETSDLSKPPPETKPLCKTTSRKKVGKAFSFLWKSKSYSVYQC 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi459g00005 804 Pfam U-box domain 317 386 IPR003613 GO:0004842|GO:0016567
Sebi459g00005 804 FunFam RING-type E3 ubiquitin transferase 315 389 - -
Sebi459g00005 804 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 502 548 IPR000225 GO:0005515
Sebi459g00005 804 MobiDBLite consensus disorder prediction 754 768 - -
Sebi459g00005 804 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 316 389 IPR013083 -
Sebi459g00005 804 Coils Coil 732 752 - -
Sebi459g00005 804 PANTHER U BOX DOMAIN-CONTAINING 43 747 - -
Sebi459g00005 804 SMART arm_5 491 535 IPR000225 GO:0005515
Sebi459g00005 804 SMART arm_5 576 618 IPR000225 GO:0005515
Sebi459g00005 804 SMART arm_5 537 575 IPR000225 GO:0005515
Sebi459g00005 804 SMART Ubox_2 319 382 IPR003613 GO:0004842|GO:0016567
Sebi459g00005 804 MobiDBLite consensus disorder prediction 745 780 - -
Sebi459g00005 804 SUPERFAMILY RING/U-box 314 391 - -
Sebi459g00005 804 Coils Coil 212 232 - -
Sebi459g00005 804 ProSiteProfiles U-box domain profile. 315 389 IPR003613 GO:0004842|GO:0016567
Sebi459g00005 804 Gene3D - 567 745 IPR011989 -
Sebi459g00005 804 FunFam RING-type E3 ubiquitin transferase 432 754 - -
Sebi459g00005 804 SUPERFAMILY ARM repeat 462 745 IPR016024 -
Sebi459g00005 804 CDD RING-Ubox_PUB 317 369 IPR045210 -
Sebi459g00005 804 Gene3D - 445 566 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi459g00005 Sebi-Chr459 102267 106041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi459g00005 1 803 U-box Gene Family AT1G24330 63.848 0.0 1016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi459g00005 - - gmx:100804344 1270.76