Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00054 ATGGTTTGCACTGCCAATGATTTACAGGGATGGAAAGATTTTCCAAAGGGACTTAGGGTTCTTCTCCTTGAAGGAGACAGCGGTTCTGCTGCTGAGATAAAAGCAAAGCTTGAGGCCATGGACTATAATGTTTCTACTTTCTACAATGAGAATGATGCCTTGTCAGCAATCTCAAGTAGTCCTGAAGGCTTCCATGTTGCTGTAGTAGAGGTGAATATAAGCAGTAGCCAAGGGGGTTTCAAATTTCTTGAGAATGCGAAGGACTTGCCAACCATTATGACTTCAAAGAGTCAATGCCTGAACACAATGATGAAGTGTATTGCGCTTGGCGCAGTTGAGTTCCTCACTAAACCACTCTCTGAAGACAAGCTCAAAAATATTTGGCAGCATGTGGTTCACAAGGCATTCAATGCTGGGGCAAGTGCTCTGTCTGAATCACTAAAACCTGTCAAAGAATCTGTAGAGTCCATGTTGCAGCTCCAATCAGAGAACAAACAACCTGAAAGTACAATTTCAATAGATTTAGAGAATGTGTCCAGGTACAGTGATAATGACCATGAGCAGTCTGCTGGAAATGATAAATATCCAGCTCCTTCAACACCACAATTAAAACAGGGGGCAAGGTTACTGGATGATGGGGATTGCCATGATCAGACTAATTCCTTAACAGAAAAAGAAAGTGGGGAACATGATGGGGAATCTAAATCTGTCGAAACTTCATGTGAGAATTTGAATGGTGAAAGTTCTCCTCAACCAATTAAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGTCAATGGTTCCAAGGGTGAGAGTGTTGTTTCATTGGATCCACAGAATACAAAGTTTCTCAGCAATGCTGATGGTAACACAACTCCAAATAAAACAGGTGTTCTTAATGATTCATGTGAGAATAAAGCTAATCGGAAGAAGATGAAAGTAGACTGGACGCCTGAACTGCACAAAAAATTTGTCAAGGCAGTGGAACAGTTGGGTATTGATCAAGCCATTCCTTCTCGAATATTGGAGCTGATGAAAGTGGAGGGCTTGACAAGGCATAATGTGGCAAGCCATCTACAGAAATATAGAATGCACAAGAGACAAATCATGCCTGGGGAAGAAGATCGAAAATGGCCAAATCAAAGAGATCCAATGCAAAGGAGCTACTGTATGCAAAGACCAATCATAGCCTACCCTCCATATCATTCTAATCACACCCTTTCACCAGCTCCTGTATATCCTATGTGGGGACAACCTGGCAGTCAAACAGCTGGTGTACAGATTTGGGGCCCTCATGGTTATCCCCAATGGCAGCCTATTGAAAGTTGGCACTGGAAGCCTTATCCAGGGGTGCATGTGGATGCATGGGGTTGCCCAGTGTTGCCACCTCCTCAAGCTCCTTGTTTTCCCTACACTCAAAATATAGCTGGGTTGCACAATGCTGCTAAAGCAGTGGATTATAGATTTGGCTTGCCACCACGAAGTTCCTTTGAGCATTATCCGGCAGAGGATGTGGTGGACAGGGTTGTGAAGGAGGCAATAAGCAAGCCATGGCTACCATTACCCTTAGGCCTGAAACCTCCATCGATGGATAGTGTGTTGGATGAGCTCTCCAAGAAAGGCATATCCAGCATACCTTTTGGCGGCAACAAGAACAAGGTTGTAGATTTGCAGGAAGTTGAGACCATTTATTTTGCCTTGTGGTCCCCACCGCAACACCGACCACTTATGATGATGTCTGAGCTGAGCCTTCACCGTTGA 1767 0.4409 MVCTANDLQGWKDFPKGLRVLLLEGDSGSAAEIKAKLEAMDYNVSTFYNENDALSAISSSPEGFHVAVVEVNISSSQGGFKFLENAKDLPTIMTSKSQCLNTMMKCIALGAVEFLTKPLSEDKLKNIWQHVVHKAFNAGASALSESLKPVKESVESMLQLQSENKQPESTISIDLENVSRYSDNDHEQSAGNDKYPAPSTPQLKQGARLLDDGDCHDQTNSLTEKESGEHDGESKSVETSCENLNGESSPQPIKPEETLIKEEEDFVNGSKGESVVSLDPQNTKFLSNADGNTTPNKTGVLNDSCENKANRKKMKVDWTPELHKKFVKAVEQLGIDQAIPSRILELMKVEGLTRHNVASHLQKYRMHKRQIMPGEEDRKWPNQRDPMQRSYCMQRPIIAYPPYHSNHTLSPAPVYPMWGQPGSQTAGVQIWGPHGYPQWQPIESWHWKPYPGVHVDAWGCPVLPPPQAPCFPYTQNIAGLHNAAKAVDYRFGLPPRSSFEHYPAEDVVDRVVKEAISKPWLPLPLGLKPPSMDSVLDELSKKGISSIPFGGNKNKVVDLQEVETIYFALWSPPQHRPLMMMSELSLHR 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00054 588 MobiDBLite consensus disorder prediction 182 255 - -
Sebi457g00054 588 SMART REC_2 18 128 IPR001789 GO:0000160
Sebi457g00054 588 MobiDBLite consensus disorder prediction 238 252 - -
Sebi457g00054 588 FunFam Two-component response regulator-like APRR2 17 142 - -
Sebi457g00054 588 SUPERFAMILY CheY-like 16 134 IPR011006 -
Sebi457g00054 588 MobiDBLite consensus disorder prediction 209 237 - -
Sebi457g00054 588 SUPERFAMILY Homeodomain-like 312 370 IPR009057 -
Sebi457g00054 588 Gene3D - 18 144 - -
Sebi457g00054 588 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Sebi457g00054 588 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Sebi457g00054 588 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 548 IPR044825 GO:0003700|GO:0045893
Sebi457g00054 588 FunFam Two-component response regulator 309 372 - -
Sebi457g00054 588 Gene3D - 309 371 - -
Sebi457g00054 588 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Sebi457g00054 588 NCBIfam myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Sebi457g00054 588 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00054 Sebi-Chr457 749548 754727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00054 1 548 Response Regulator Gene Family AT4G18020 48.522 3.61e-142 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Sebi457g00054 Response_reg 3.2e-08 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00054 - - gmx:100779121 944.11