Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00048 ATGCAAACTCTGGCAGATACTTCATGCACTGATTGTTTCATTCATTCTCGCGCAGCATATTACCCAAATTCTGAAGAACATGGAACAGACGTAGGTGCATGTGGGTTTGGTTCATTTGGTGCTACGGTGAATGGCGGGGATGTATCAGCTGCATCTAATCTTTATCGAAACGGTGTTGGCTGTGGTGCCTGTTATCAGGTGAGGTGCAGCAACAGTGCTTATTGTTCAGAGAAGGGTGTGACAGTAGTTATAACTGACCAAGGCTCAAGTGATAACACTGATTTCATTCTTAGTAAACATGCCTTTGGCCGGATGGCTCAGACCACTGATGCAGCTGCTTCTCTATTAGCCCTTGGCGTGGTTGATATTGAGTATAGACGTGTTGCATGCAGCTACCCAAGCAAAAACATAACAATCAAGATAGATGAGAGCAGCAGCAACCCTTATTACTTGGCTTTTGTCATATGGTATCAACAAGGAACGAGAGACATAACTGCTGTGCAGCTCTGTGAGACTCAGAACTTTGTGTGCAAGTTACTGGATCGGAGCCACGGAGCAGTGTGGACTATTACCTCTCCACCGAGTGGACCTTTGTCTATAAGGATGTTGTTTAGTGATGAAGAAGAGGGAGAAGAAACATGGATTGTTCCTGTTAATAACATACCCCAAGACTGGAAGGCTGGAGAAACATACGACACAGGGGTACAAGTGAACCTATAG 720 0.45 MQTLADTSCTDCFIHSRAAYYPNSEEHGTDVGACGFGSFGATVNGGDVSAASNLYRNGVGCGACYQVRCSNSAYCSEKGVTVVITDQGSSDNTDFILSKHAFGRMAQTTDAAASLLALGVVDIEYRRVACSYPSKNITIKIDESSSNPYYLAFVIWYQQGTRDITAVQLCETQNFVCKLLDRSHGAVWTITSPPSGPLSIRMLFSDEEEGEETWIVPVNNIPQDWKAGETYDTGVQVNL 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00048 239 Gene3D - 3 131 IPR036908 -
Sebi457g00048 239 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 135 IPR007112 -
Sebi457g00048 239 SUPERFAMILY PHL pollen allergen 135 232 IPR036749 -
Sebi457g00048 239 PRINTS Expansin/Lol pI family signature 219 233 IPR007118 GO:0005576
Sebi457g00048 239 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Sebi457g00048 239 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Sebi457g00048 239 Pfam Lytic transglycolase 51 125 IPR009009 -
Sebi457g00048 239 CDD DPBB_EXLB_N 14 130 - -
Sebi457g00048 239 SUPERFAMILY Barwin-like endoglucanases 7 134 IPR036908 -
Sebi457g00048 239 Gene3D - 133 237 IPR036749 -
Sebi457g00048 239 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 149 233 IPR007117 -
Sebi457g00048 239 PANTHER EXPANSIN-B3 15 236 - -
Sebi457g00048 239 Pfam Expansin C-terminal domain 137 213 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00048 Sebi-Chr457 645674 647190 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00048 10 235 Expansin Gene Family AT4G17030 44.053 1.11e-60 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00048 - - gmx:100794009 469.929