Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00032 ATGAAGTGTTTATTCTTCTTCAAACAAAAATCCAAATTGGACCCAGAATTAAACCGAAGCAAGAAGAAAAATCAGGTGGTGAATCGAGCCACAAGGTCCCCCAATATGCAGTCATCGCCGAAGAGCGTAAAAGAATTGTACAAAGAGAAAGAGCACAATTTCAGAGTTTTTACTTTGCAAGAGCTCGTAGATGCAACAAATGGTTTCAATAGGATGCTGAAGATTGGAGAAGGGGGTTTTGGGAAAGTATACAGAGGAACAATTAGTCCTCAAAACGGACAAGGTGACCCAATTGTGGTTGCAATCAAAAAACTTAACACTCGTGGCTTACAGGGGCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGCATTGTCAATCACCCGAATTTGGTTAAGCTTTTGGGATACTGCTCTGTAGATAGTGAAAGAGGAATCCAACGGCTGTTAGTGTATGAGTTCATGTCCAATAGGAGCCTGGAAGATCATCTTTTCAGTCGTTCTTTACCTCCATTGCCTTGGAAAGCAAGATTGCAGATCATGCTCGGTGCTGCTCAAGGATTACAGTATCTACATGACGGATTGGAGGTTCAGGTGATCTACCGAGATTTCAAATCTTCAAATGTGCTGTTGGACACGAAATTCCACCCCAAGCTCTCAGATTTTGGTCTTGCTAGGGAGGGCCCAACAGGCGATCAGACTCATGTATCTACTGCGGTAGTGGGGACACAGGGATATGCTGCCCCAGAGTATGTTGAAACAGGTCACCTCAAAATTCAGAGTGATATTTGGAGTTTTGGTGTGGTACTTTATGAGATCCTCACAGGGAGGCGAACATTGGAAAGAAACCTTCCAACAGCGGAACAAAAGCTTATAGAATGGGTTAAAAATTACCCTGCTGACAGTAGCAGATTCAGCAAGATAATGGATCCACGTCTCAGGAATCAATATTCTCTTGATGCAGCTAGGAGAATAGCCAGGTTGGCAGATAGCTGCTTAAAGAAGAATCCTGAAGATAGGCCATCCATGAGTCAGATAGTGGAAAGTTTGAAGCAAGCATTGCAGTGTTCACAAACAGAAACTTCAAACTCAAATACTACTCAGTCTCAGAATATGACTTCTCAATCCCCTCGGTCTAAATTGGTACGGAAGTGA 1155 0.4277 MKCLFFFKQKSKLDPELNRSKKKNQVVNRATRSPNMQSSPKSVKELYKEKEHNFRVFTLQELVDATNGFNRMLKIGEGGFGKVYRGTISPQNGQGDPIVVAIKKLNTRGLQGHKEWLAEVQFLSIVNHPNLVKLLGYCSVDSERGIQRLLVYEFMSNRSLEDHLFSRSLPPLPWKARLQIMLGAAQGLQYLHDGLEVQVIYRDFKSSNVLLDTKFHPKLSDFGLAREGPTGDQTHVSTAVVGTQGYAAPEYVETGHLKIQSDIWSFGVVLYEILTGRRTLERNLPTAEQKLIEWVKNYPADSSRFSKIMDPRLRNQYSLDAARRIARLADSCLKKNPEDRPSMSQIVESLKQALQCSQTETSNSNTTQSQNMTSQSPRSKLVRK 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00032 384 Pfam Protein tyrosine and serine/threonine kinase 74 350 IPR001245 GO:0004672|GO:0006468
Sebi457g00032 384 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 155 365 - -
Sebi457g00032 384 PANTHER OS01G0588500 PROTEIN-RELATED 33 354 - -
Sebi457g00032 384 MobiDBLite consensus disorder prediction 17 42 - -
Sebi457g00032 384 MobiDBLite consensus disorder prediction 27 42 - -
Sebi457g00032 384 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi457g00032 384 Gene3D Phosphorylase Kinase; domain 1 48 154 - -
Sebi457g00032 384 MobiDBLite consensus disorder prediction 354 384 - -
Sebi457g00032 384 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Sebi457g00032 384 CDD STKc_IRAK 75 352 - -
Sebi457g00032 384 ProSitePatterns Protein kinases ATP-binding region signature. 75 104 IPR017441 GO:0005524
Sebi457g00032 384 SUPERFAMILY Protein kinase-like (PK-like) 51 350 IPR011009 -
Sebi457g00032 384 Gene3D Transferase(Phosphotransferase) domain 1 155 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00032 Sebi-Chr457 397253 399745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00032 1 350 Glycoside Hydrolase AT3G07070 42.818 1.26e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi457g00032 PK_Tyr_Ser-Thr 3.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00032 - - gmx:100305403 601.282