LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi457g00022	ATGTCTGAACTGAACCTCCTCCAAGCTTCTCAGTCTCACCGCAAGGGCAAGGCCTTATTCCTTATTCAAGGATGTCATTGGAGTTGGGAAGCGACGCTTTGTGATTTCCGTTTCTCATCGAAACCGGAACTCTCTCTTGGTAGTAACCACTGCAGGCCTCATCCTCCGTCGCACCCAAGGAATGGGGGTTTGGAGGAGGAGATGAATTTGGAGTCATCAAGAGCAATGACAACATCAGTCAATAAAAGTCATTCTGAAGAAAGATTTGGGAAGCCATTGATGGAAAATGGGAACTGCACTCCGCTTGTTCGGCCCATGTATAAGCGGCGTAAAGTTTCCGCCATTCGTGATTTCCCAAAAGATTGTGGACCGTGTGCTTCAAAAATTGATCCAGTGTTAAAGGTAGATAATGCTGATTTTGGTTCTGCTAATGGTACAATTGTTGAGGATAAAAATGGTGAATGTTTAGGGGGTGACACTGTTAGAATTTCCAAGTGTGGAGATGATCCTCAACATTCTGAGTTAAGAAAAGATTCGATTCATTTTGAGACTCTTGGCCAAACATTTGACTGTAGTATGAAGAAAGAAAATCCTGTAGTCTCAACTCATCAAGTGGATGGGCCTACTTCAGCAAATGATGATCCTGGAAAAGTGGCACCGGTAGGCATGGAGGTGTTGGATACAGAATTTGCAACAGAAAACTCTGTAGAACATGACTCTTATATATCAAAGCCATCTTCTACAGTGGGTGAGGTGGCTATGTCTGATGGTGAAAAATCATTATTATTGAATGTCTATTTAGCTGGTTCTAGTGCTTGTTTGGAGGAGAGTGTAACTAGAAGGTATCTTCCTCGAAGAAAAGTTTCAGCTGTCAGAAACTTTCCTCTTTTTTGTGGACGCAATGCTCCACGTCTCAGTAAAGATGAGTGTCAAATGAAGATCTCTTCTTTGAATAATAAGAGAGTGGGTCAACAGAACTTGGCTGTAGATGGCAATCCATTGAAAAGAGTAGCAGGCACTGATGTAAAAGAAGTGGAAAATAACATTCAAGCTGAACATGGTTGCAAGAGAAAGCTTGCGGACATTGTTCAAGCTGATTCTGGAGGGAATCCTACAGAGAAAGTTAAGATGTCGGGTGTATTTGAACCATGTTCTGCGTCGAAATTGCCACTGGAAAACACAAGAGAAAAGTACAATACCCTTCCTGAAAAAAGTAATCATCATCAGGTTGAAATTAATTCCAAGGCAGTTGTTAAAGAGGAAACTAGAGATACTGTACAGGTTGAGGGAACATCAGGGCTAGAGTTGATAGTTTACCCAGAAGTCCAGGGTCGTGAGACAAAGCCTTTGGATATGTCTAGTTATCAGCGTGAGTCAAAAGGAAATTTGAATAGATTGGTGGTCTCATCAGACAGGAAAGTAGTGTTAGGTCTGATGTCTGAATCAGAGTGTCCTTCAAGGTCTGCTGATAAAGGTTCTTCCAAATTTAAGTTGATTGGTGGTACAAATGAAAGCAAGGGAAAGAAAGTTGATTTTGCTGCACGGCTAGGCAGGTCTAAAACTGCTATCAAGACTAAAGATGCACGGAATCATTCTGGGCAGAAGCTGTTGAAAAAGAAAAAAGAAAACACTGCTTCTGATGATATGGGTCAATTAGTGATTTGGGAAAAAGATTCTCCTGACCCTAATGAAAACAACAAAGACTTTCAAATTGTCCCAAAATCACATGGTTTGGATGTATATGTTCCTCCTTTGGATTATCGTAATTCCAGTGGTCATGAGAATGACTCAAATGTGACCCGAAATAAAGTGAGGGAAACATTACGCCTTTTTCAAGCTGTTTCTAGAAGGCTTTTGCATGAAGTTGAAGCTAAGTCAGATGAGAAATCAAATAATAAAAAGAGGATTGATTTACATGCTGCGAAGATCCTTAAGGAGAAAGGGAAATATGTTAACATAGGCAAGCAGATCTTGGGATCTGTTCCTGGGGTTGAGGTTGGTGATGAATTTCAGTACAGGGTGGAGCTTACTGTAATTGGCCTTCATCGCCAGATTCAGGGAGGGCAGGGTGGGAATGTGATGAGCACTGATAAAGATAAAGAACCTGAAGATCAAAAGCTTGAACGGGGCAATCTTGCTTTGAAGAACAGTAGTGAGGAAAAGAATCCTGTTAGGGTGATACGTGGCTCCGAATCAATGGATGGAAAATGTAAGACTTATGTTTATGATGGACTGTATCTTGTTGAGTCATGTTGGCAGGATATGGGGCCACATGGGAAACTGGTTTATAGGTTTCGCCTGCGAAGAATCCCAGGTCAACCAGAGCTTGCTTTAAAGGAAGTGAAGAAATCTAAAAAGTTCAAAACAAGAGAAGGTCTATGTGTTGATGATATTTCTTATGGTAAAGAGCGAATTCCCATATGTGCTGTGAACACCGTAGATGATGAAAAACCCCCACCCTTTACATACATAACTGACATGATTTATCCTGATTGTTGCAATCTTGTTCCTCCAGAAGGATGTAATTGTACTAATGGATGCTCTGACTTGAAGACATGTTCTTGTGTAGTAAAAAATGGGGGAGAGATCCCATTCAACCATAATGGGGCTATTGTAGAAGCAAAGCCTTTAGTCTACGAGTGTGGACCTTATTGTAAGTGCCCTTCAACCTGCCATAACAGAGTCAGCCAGCTTGGAATAAAGTTTCAACTTGAAATTTTTAAAACCGATACAAGGGGATGGGGTGTAAGATCCCTAAATTCCATCCCTTCAGGAAGTTTTATCTGTGAATATATAGGAGAGGTTCTTGAAGAAAAGGAAGCTGAAGAAAGAACTGGTAATGATGAGTATCTTTTTGATATTGGAAATAACTACAGCAACAGTAATCTTTGGGATGGACTTTCGACCCTCATGCCAGATGCACAATCAAGTTCTTCTGAAGTTGTGAAGGATGGTGGCTTCACCATTGATGCAGCCCAGTTTGCTAATGTGGGGAGATTCATCAACCATAGTTGCTCCCCTAATCTTTATGCTCAGAATGTCCTTTATGATCATCATGACAAAAGGATCCCTCACATAATGTTCTTTGCTGCTGAGAACATTCCTCCCTTGCAAGAGCTGGCTTATGATTACAATTATATGATGGATCAAGTCCGTGATTCTGATGGCAATATAAAAAAGAAAGAATGCTTTTGTGGTTCTGTGGAATGTACTGGTAGGATGTATTGA	3228	0.4089	MSELNLLQASQSHRKGKALFLIQGCHWSWEATLCDFRFSSKPELSLGSNHCRPHPPSHPRNGGLEEEMNLESSRAMTTSVNKSHSEERFGKPLMENGNCTPLVRPMYKRRKVSAIRDFPKDCGPCASKIDPVLKVDNADFGSANGTIVEDKNGECLGGDTVRISKCGDDPQHSELRKDSIHFETLGQTFDCSMKKENPVVSTHQVDGPTSANDDPGKVAPVGMEVLDTEFATENSVEHDSYISKPSSTVGEVAMSDGEKSLLLNVYLAGSSACLEESVTRRYLPRRKVSAVRNFPLFCGRNAPRLSKDECQMKISSLNNKRVGQQNLAVDGNPLKRVAGTDVKEVENNIQAEHGCKRKLADIVQADSGGNPTEKVKMSGVFEPCSASKLPLENTREKYNTLPEKSNHHQVEINSKAVVKEETRDTVQVEGTSGLELIVYPEVQGRETKPLDMSSYQRESKGNLNRLVVSSDRKVVLGLMSESECPSRSADKGSSKFKLIGGTNESKGKKVDFAARLGRSKTAIKTKDARNHSGQKLLKKKKENTASDDMGQLVIWEKDSPDPNENNKDFQIVPKSHGLDVYVPPLDYRNSSGHENDSNVTRNKVRETLRLFQAVSRRLLHEVEAKSDEKSNNKKRIDLHAAKILKEKGKYVNIGKQILGSVPGVEVGDEFQYRVELTVIGLHRQIQGGQGGNVMSTDKDKEPEDQKLERGNLALKNSSEEKNPVRVIRGSESMDGKCKTYVYDGLYLVESCWQDMGPHGKLVYRFRLRRIPGQPELALKEVKKSKKFKTREGLCVDDISYGKERIPICAVNTVDDEKPPPFTYITDMIYPDCCNLVPPEGCNCTNGCSDLKTCSCVVKNGGEIPFNHNGAIVEAKPLVYECGPYCKCPSTCHNRVSQLGIKFQLEIFKTDTRGWGVRSLNSIPSGSFICEYIGEVLEEKEAEERTGNDEYLFDIGNNYSNSNLWDGLSTLMPDAQSSSSEVVKDGGFTIDAAQFANVGRFINHSCSPNLYAQNVLYDHHDKRIPHIMFFAAENIPPLQELAYDYNYMMDQVRDSDGNIKKKECFCGSVECTGRMY	1075

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi457g00022	1075	Gene3D	-	641	689	IPR036987	-
	Sebi457g00022	1075	Gene3D	-	690	789	IPR036987	-
	Sebi457g00022	1075	ProSiteProfiles	Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile.	514	1075	IPR025794	GO:0016571
	Sebi457g00022	1075	Pfam	SAD/SRA domain	688	773	IPR003105	-
	Sebi457g00022	1075	ProSiteProfiles	SET domain profile.	902	1045	IPR001214	GO:0005515
	Sebi457g00022	1075	ProSiteProfiles	Post-SET domain profile.	1059	1075	IPR003616	-
	Sebi457g00022	1075	Gene3D	SET domain	790	1075	IPR046341	-
	Sebi457g00022	1075	SUPERFAMILY	SET domain	785	1046	IPR046341	-
	Sebi457g00022	1075	ProSiteProfiles	Pre-SET domain profile.	839	899	IPR007728	GO:0005634\|GO:0008270\|GO:0034968\|GO:0042054
	Sebi457g00022	1075	SUPERFAMILY	PUA domain-like	640	782	IPR015947	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi457g00022	Sebi-Chr457	276600	281471	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi457g00022	598	1072	Su(var)3-9 homologs	AT5G04940	38.168	4.42e-102	334

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	SET	Sebi457g00022		SET	1.1e-20	No_clan

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi457g00022	K11420		-	gmx:100803378	1199.5

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