Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00021 ATGGGCAAACAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCACTTTGGCGCAATGGACCACCCGAGAAGCCAGTACTATGCAATGCATGTGGGTCTAGGTGGAGGACAAAGGGAACACTTGCAAATTATACCCCTTTACATGCTCGGGCAGAAACTGATGATTATGAGGATCAAAGGGCTCCGAGGGTAAAGAGTATATCGTTGAATAAGAACAAAGAAGTGAAATCACTCAAACGAAAGCAGAACCATGATAATGTAGTATCTGGAGGCCTTGCACCTGATTACAACCAGGGATTCCAAAAGGCTGTAGATGAAGATACAAGCAATCGGTCAAGTTCAGGATCAGCCATCTCTAACTCAGAGAGCTGTGCACAATTTGGTGGCACAGATGCTAGTGATCTGACAGGTCCTGCTCAGTCAGTGGTCTGGGATGCCATGGTGCCTTCAAAAAAGAGGACATGTGTGGGTCGACCAAAGCCTTCTTCTGTTGAGAAGCTCACAAAAGATTTATGCACTATTCTTCACGAACAACAGTCTTATTTTTCTGCATCTTCTGAAGAAGATCTTCTTTTTGAAAGTGAAACACCAATGGTCTCTGTTGAGATAGGGCATGGAAGTGTTCTCATTAGGCACCCTAGTTATATAGCTCGTGAAGAAGAATCTGAGGCTAGCTCTCTTTCATTTGATAATAAACAATGCCTATTGAGTGAGGCATATACATCTTCTGGTGTCATTCTTATGCATAATGATTCTAGTGATATGAAGTTCTCATCTCAGGGAGTTGAAAAGGTCAGGAGCTCTGCTGGCCAAGGAATGCAGCAGGAGCTAATTATTAAAAGTGACAAGTCTCAGCTTGAAAGAGTACAGATCCTTGGAAATCATGATTCACCACTGTGCGCAATAGATTTGAATGATGTAGTGAACTATGACGAGTTTTTCAGTACCTTGACAAATGAAGAGCAGCAGCAATTACTGCAATTTCTTCCTGTGGTTGATACGGCTAATATTCCTGATAGCCTTAAAGTCATGTTCGATAGCTCTCAATTCAAGGAGAACTTAACTTATTTTCAGCAGCTTCTTGCGGTGGGTGTCTTTGATATCTCTTTGTCAGGGGCAAAACCTGAAGACTGCAACACTTTGAAAAGACTTGCATTATCCAATCTGTCAAAATCAAAATGGGTAGAACACTACTATTTTCTAAAGAGATGTCAAAACAGAGCTGGAAAATCTGGTACTCCAGGATCTAGTGGTACAGAATCAACTAATGTTGCAAACATCGAGAGAATGCGTGATAGTCGATATCAAAACTTTCCAGAGAAGAAGACAATAATAAGGAGCCCCAAAAGAGTGATCACAAAGGGTGGCTGTGAGGGCAAAGAAGATGGTGCTTGCTATACTCCAAAAAGGCTATTTCCTTTGCCTCCTGCTGCTAGCTCACTCTTGATGGATTCTTTAAACTTTGCTGGGGAGAGTTCTGATCAGGATCTGCTGCTAGAGGTTCCATCTAATAGTTCTTTTCCACAAGCAGAGCTCCTGTACCCAACTTTAAGCTTTGGTGCTCAAGCCAGCACTAGTAGTAGCTCAGCATACCCTCATCTTGTCCATCATTAA 1617 0.4249 MGKQGPCYHCGVTSTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAETDDYEDQRAPRVKSISLNKNKEVKSLKRKQNHDNVVSGGLAPDYNQGFQKAVDEDTSNRSSSGSAISNSESCAQFGGTDASDLTGPAQSVVWDAMVPSKKRTCVGRPKPSSVEKLTKDLCTILHEQQSYFSASSEEDLLFESETPMVSVEIGHGSVLIRHPSYIAREEESEASSLSFDNKQCLLSEAYTSSGVILMHNDSSDMKFSSQGVEKVRSSAGQGMQQELIIKSDKSQLERVQILGNHDSPLCAIDLNDVVNYDEFFSTLTNEEQQQLLQFLPVVDTANIPDSLKVMFDSSQFKENLTYFQQLLAVGVFDISLSGAKPEDCNTLKRLALSNLSKSKWVEHYYFLKRCQNRAGKSGTPGSSGTESTNVANIERMRDSRYQNFPEKKTIIRSPKRVITKGGCEGKEDGACYTPKRLFPLPPAASSLLMDSLNFAGESSDQDLLLEVPSNSSFPQAELLYPTLSFGAQASTSSSSAYPHLVHH 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00021 538 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Sebi457g00021 538 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Sebi457g00021 538 Pfam Asx homology domain 287 368 IPR028020 -
Sebi457g00021 538 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 296 405 IPR044867 -
Sebi457g00021 538 CDD ZnF_GATA 6 53 IPR000679 GO:0006355|GO:0043565
Sebi457g00021 538 ProSitePatterns GATA-type zinc finger domain. 7 32 IPR000679 GO:0006355|GO:0043565
Sebi457g00021 538 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Sebi457g00021 538 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Sebi457g00021 538 MobiDBLite consensus disorder prediction 103 124 - -
Sebi457g00021 538 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Sebi457g00021 538 MobiDBLite consensus disorder prediction 77 124 - -
Sebi457g00021 538 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
Sebi457g00021 538 FunFam GATA transcription factor 27 3 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00021 Sebi-Chr457 265244 270754 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00021 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.435 1.32e-161 468
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi457g00021 ASXH 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00021 - - gmx:100803914 834.328