Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00010 ATGAGACAAGCATTAAGGGAGGCAAGAAACAACAGGCCCTACACATTAAGGGAACGGAGGTATATAGACTATGCAGAACCTGAATTTAACGACAATGAAAATGTTGAAGACCACATAGTATCCAGACCCAACATACCAACTGAAAGAAGAAACACAGCATCATCATCATCATTTATTCCACCACCACCAGCAACAGAGACTGTGATGGTGAACTCAGTTGTTGACAATATTGCAAGAGAAACTGTGATGGTGAACTCAGTTGTTGAAAATATTCAAAGAGAAACTGTGATGGTGAACTCACTCTTGGATAATATTCCAAGGCATTGCAAGGGTAGGAGGAGTCGCACTGCTAAGAAGACCAGTAAAACAGAACAAAAGAGGCAAAACAGTGAGGTTGGACAAACTTCAACCATTGAAATAGATCCACCTTTACATGAAGGCTCAAGTCAAGGACAAGGTTGCAGTGTGGAAAGGGTTTCATCTATACCTGAAGCAACAAGTTCAAGTAAAAAAACAATCTTGTCTTTGTTAATAGACCGTAAGCACATTCAGGAAGACGAGCAAGTCTTCTATAAGCATGATGATAGAAATGAGGGAAGTGCAGCTGCAATGGGACTGAGAGGAAGAATTACCAGAGGTGGAATTCTCTGCAGCTGTTGCCAAAAAGAAATGTCTGTGTGGGCATTTGAAAGACATGCAAATAGTGATCACAGAAAACCCTATGAACGTATTTACATCCTCCAAACACAAGAAAATCTCCAAGATTGCCTCATTGCTGTCTGGCTTCATTCAACTGAAAGAGAACGCCGTGAAGAATTCTGCTTTTTACCCAAGGAAAAACAACAAGATGATCCTTGTTCAATATGTGCAAATGGGGGAGACATATTCCACTGCGAGCATTGTCCCTCAGCATTCCATGCATCCTGTATGAATATGGAGAGGGCTCCCCGTCGTGATTGGTCTTGTCCCTACTGCGTTTGTAAGTACTGTAGTCTCAGGGTTTATGGAAAACAAAGGCAACTCATCACATGCTTGCAGTGTGACAAAAATTTTCACTGGCAATGTTTAAAAGAATTCTCCAAAGACCCTGTGGATATTAGCGGGGACCTACTGTATTGCAGCCAAAGCTGCAAAGAGATATATGATGAACTGGAGAGGTCAATTGCAGTCAATAGCGAGTTTGAAAACTACACTTGGTCAATCATCCGCCCTCAGACAACCTTAGCTATGACTAGATATTTTGAATGCAATGCAAAGGTCCTAGTAGCTTTCTCATTAATGAATGAATGTTTCCAAACAATAACTGACAGACACACAGGCATCAATGTGGTTCAAAATGTACTATACAGTTGTAGATCACCAGATTTAACCAGGGTCAATTTTGGGCGTTTTCATATATTTATCTTGGAGAAAGATGATGCAATTGAATGCGCAGCTTCTATAAGAATTCATGGGAGGGAGGTTGCAGAAATGCCTTTTATTGCCACAGAAGGGACATGCAGGAGACAAGGAATTTGCAGGAATTTAATGATTGTAATTGAATCGTTCCTATGTGCCCTTAAAGTGCAGAAGCTGGTCATTCAATCTGTTCCAGATACTTCGGATATGTGGAAGCACAAGTTTGGTTTCAAAGAACTGGCTGGGAAATTTGAGAAAGAACTTGCCTCCTATAACATTTTGACGCTCCCTCATGCTTCAAAACTATACAAAGACTTGGGTGGTAATCCAAATTGA 1734 0.4083 MRQALREARNNRPYTLRERRYIDYAEPEFNDNENVEDHIVSRPNIPTERRNTASSSSFIPPPPATETVMVNSVVDNIARETVMVNSVVENIQRETVMVNSLLDNIPRHCKGRRSRTAKKTSKTEQKRQNSEVGQTSTIEIDPPLHEGSSQGQGCSVERVSSIPEATSSSKKTILSLLIDRKHIQEDEQVFYKHDDRNEGSAAAMGLRGRITRGGILCSCCQKEMSVWAFERHANSDHRKPYERIYILQTQENLQDCLIAVWLHSTERERREEFCFLPKEKQQDDPCSICANGGDIFHCEHCPSAFHASCMNMERAPRRDWSCPYCVCKYCSLRVYGKQRQLITCLQCDKNFHWQCLKEFSKDPVDISGDLLYCSQSCKEIYDELERSIAVNSEFENYTWSIIRPQTTLAMTRYFECNAKVLVAFSLMNECFQTITDRHTGINVVQNVLYSCRSPDLTRVNFGRFHIFILEKDDAIECAASIRIHGREVAEMPFIATEGTCRRQGICRNLMIVIESFLCALKVQKLVIQSVPDTSDMWKHKFGFKELAGKFEKELASYNILTLPHASKLYKDLGGNPN 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00010 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 269 337 IPR013083 -
Sebi457g00010 577 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 460 546 IPR016181 -
Sebi457g00010 577 SUPERFAMILY FYVE/PHD zinc finger 281 331 IPR011011 -
Sebi457g00010 577 ProSiteProfiles Zinc finger PHD-type profile. 283 328 IPR019787 -
Sebi457g00010 577 MobiDBLite consensus disorder prediction 107 163 - -
Sebi457g00010 577 PANTHER PHD FINGER PROTEIN 12 72 572 IPR042163 GO:0003714|GO:0045892
Sebi457g00010 577 MobiDBLite consensus disorder prediction 127 163 - -
Sebi457g00010 577 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 422 563 IPR000182 GO:0016747
Sebi457g00010 577 Pfam Tify domain binding domain 208 258 IPR032308 -
Sebi457g00010 577 SMART PHD_3 327 378 IPR001965 -
Sebi457g00010 577 SMART PHD_3 285 326 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00010 Sebi-Chr457 112584 115133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00010 122 572 PHD Transcription Factor Family AT4G14920 35.524 1.31e-88 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00010 - - vum:124834316 422.55