Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi457g00007 ATGTATGCAGATTCGGGGCTCGTCTATAAATTCGGGAAGACGATTCAGAAGACATGGTACTCTACGGTGTACTTCGCGATGCCGTTAACGTCGGGGTGGGTCCCATCTCTCGATGCAGCCTCCACCGGAGAGCTACTCGTCGGGTTCTCTGCGACGAAGAGAAGGCTGCGCCGGCCAAAGGGGAAGCATTACCGCGGCGTTCGGCGACGGCCGTGGGGGAAATTCGCGGCGGAGATCCGTGACCCGGCTAAGAATGGGGCCCGGGTTTGGCTCGGAACGTTTGAAACGGCTGAGGACGCTGCATTGGCTTACGATCGAGCTGCATACAGGATGCGAGGCTCGCGGGCTATGTTGAATTTCCCGCTTCGGGTCAATTCGGGTGAGCCCGACCCGGTTCGAGTGACCTCGAAAAGGTCCTCGTCGGATTCTTCTTGTTCTTCATCGTCGTCGGATAGTGGGTCGACGGTGAAGCGGAGAAAGAAGGTGGTGGGGCCCATGGTGCCCGTGGTGACAGCTCAGAGTGAATTGAAAACTGAGCAAGTGGGAAGTAAGTGGCAGAGTGCACACGTGGAGAACGGTTATTGGTCAGCTAATGCGTAA 600 0.5717 MYADSGLVYKFGKTIQKTWYSTVYFAMPLTSGWVPSLDAASTGELLVGFSATKRRLRRPKGKHYRGVRRRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRAMLNFPLRVNSGEPDPVRVTSKRSSSDSSCSSSSSDSGSTVKRRKKVVGPMVPVVTAQSELKTEQVGSKWQSAHVENGYWSANA 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi457g00007 199 Pfam AP2 domain 63 113 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 FunFam Ethylene-responsive transcription factor 2 62 122 - -
Sebi457g00007 199 PRINTS Ethylene responsive element binding protein signature 87 103 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 MobiDBLite consensus disorder prediction 132 153 - -
Sebi457g00007 199 SMART rav1_2 63 127 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 ProSiteProfiles AP2/ERF domain profile. 63 121 IPR001471 GO:0003700|GO:0006355
Sebi457g00007 199 PANTHER DNA-BINDING DOMAIN 54 161 IPR044808 GO:0003700|GO:0009873
Sebi457g00007 199 MobiDBLite consensus disorder prediction 127 168 - -
Sebi457g00007 199 SUPERFAMILY DNA-binding domain 63 123 IPR016177 GO:0003677
Sebi457g00007 199 Gene3D AP2/ERF domain 62 124 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi457g00007 Sebi-Chr457 56362 57129 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi457g00007 60 179 AP2-EREBP Transcription Factor Family AT5G47220 74.590 5.76e-51 163
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi457g00007 AP2 8.3e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi457g00007 K09286 - qsa:O6P43_034053 172.555