Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi455g00035 ATGGCATTCGCTCCCACCGGCGTCGGATTCGTTGTGCCGTTCGTTCAAGAAGATACCGCTTGCCTCCTCAACGGTGCTTCTGTCCTTGACGCCAAGCATCCCAAGCTCGATGAAAGAGTGGAACTGTTCGCCAATCTCATTATTGAGAATGTGGTGAACGTGGTTGAAACAAGTCAGCTCCGCAGTCGAATCGCAGGGATTCAGAAGATGTGCAATGACGACGATTCAAACTCTTCAGATGGAAATGCTTCCTCCCCTCTTCCCTCTGTTCTCGAAACTCCTTTCAAGATTGTCGACGCTTCCCAAAGCCCCGCTGCTGGAAACCCTGATGAGATCGCGAAGCTATTTCCAAGCATGTTCGGGCAACCATCGGCGATGTTGGTACCGAGTGATTCGAACATTGTGCAGGCGAATCAAGAATTGAAGACTGGTGTGGCTGCTGGGATTGCTTTACAGGTTTACAGGTTTGCTCCAAGAAGGTCTGTGGAGAGTGCGTTCAAGGTGTTTGAAACTATGCCAGAGAGAAACTTGGTTTCCACACTTTCTTCCAAACTCTCTCTACCGGAAACGCTAACGGCAGAAAAGACGGAGCCATTGCTGGCGGCTGCTGCTTTACAGTCTGGTCCTGATGAGCGGAGTATTCCTGGAAATACCATAGTTGTTGATGTTGACATGCCTTTTAGTGGCCTGACAACATTTGGAGTTTCATTTTTGTCAAAGTTCCAATGTTCTCAAATGCCGCATCCACTGCTAGATGAGGTAACATTTGTGGACACTCCTGGTGTCCTGTCTGGTGAGAAACAAAGGACTCAACGAAGCTATGATTTCACCGGTGTTGTATCTTGGTTTGCTGCCAAATGTGATCTTATTCTTATGCTATTTGATCCGCATAAACTTGACATCAGTGATGAGTTTAAACATGTAATTGCATCTTTACGCAGTAATGATGACAAGATATGCGTAGTTTTGAATAAGGAGAATACTGGACAAATTAAGATTGGAGATCTTGGATTGGCAATTGTCATACAGCAGCCTACTGCCCGTAGTGTTATAGGTACACCAAAATTCATGGCCCTTGAGCTTTATGAGGAAGAATACAACAAACTTGTTGACATATATTCCTTTGGCATGTGCATCTTGGAAATGATCATTAAGTTTCAGGATGGAGACCTTGTTGTTTTCTCTGAAGTCCCTTTGCGACAACACAGGAGGTGTGATGGGAATTGTGAGTTCGGGCAGTTCTTTCCTGCCAACAGATCTGGTGACTTTGAGAATGCTTTGAGGCTCTTTGGCTTAAATAACATGTTAAGAATCATGCGTGTTGTGGAACCTGAACAAAGACAAGCTGCTGCTGATTCTATACTTAGTGAGGGTACCGCATGGACAAATAACCCAGCTAGTGGTTTACATGGTTATGAGTTACATCTTAGGTCACAAGTTGAATCTTCTTCAAGGGAATTACAAATTGTGAATCAACTTCTTGCAATTTGTAAAGGACAGGTCAATCAACCAAATTTAAACTTTGGTGAAATGCATACTGGACACATGGGCGGTGTGGAACCTCACAAGTTGGGGACAAGTAATTCCCATGAAAGAGGAGAATCAAGCACTATTACACTGAAGGAGAAAAAGGATGAAGAGAAAGAGTCAGAGACACATGGAAAGGGAAAACAACCTATTGTTGATGAAGATGAGTCAGAGGGTAGTGACTAA 1713 0.4413 MAFAPTGVGFVVPFVQEDTACLLNGASVLDAKHPKLDERVELFANLIIENVVNVVETSQLRSRIAGIQKMCNDDDSNSSDGNASSPLPSVLETPFKIVDASQSPAAGNPDEIAKLFPSMFGQPSAMLVPSDSNIVQANQELKTGVAAGIALQVYRFAPRRSVESAFKVFETMPERNLVSTLSSKLSLPETLTAEKTEPLLAAAALQSGPDERSIPGNTIVVDVDMPFSGLTTFGVSFLSKFQCSQMPHPLLDEVTFVDTPGVLSGEKQRTQRSYDFTGVVSWFAAKCDLILMLFDPHKLDISDEFKHVIASLRSNDDKICVVLNKENTGQIKIGDLGLAIVIQQPTARSVIGTPKFMALELYEEEYNKLVDIYSFGMCILEMIIKFQDGDLVVFSEVPLRQHRRCDGNCEFGQFFPANRSGDFENALRLFGLNNMLRIMRVVEPEQRQAAADSILSEGTAWTNNPASGLHGYELHLRSQVESSSRELQIVNQLLAICKGQVNQPNLNFGEMHTGHMGGVEPHKLGTSNSHERGESSTITLKEKKDEEKESETHGKGKQPIVDEDESEGSD 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi455g00035 570 MobiDBLite consensus disorder prediction 508 570 - -
Sebi455g00035 570 Gene3D - 185 323 IPR027417 -
Sebi455g00035 570 ProSiteProfiles LOB domain profile. 393 494 IPR004883 -
Sebi455g00035 570 Pfam Protein kinase domain 325 385 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi455g00035 570 MobiDBLite consensus disorder prediction 525 564 - -
Sebi455g00035 570 Gene3D Transferase(Phosphotransferase) domain 1 324 456 - -
Sebi455g00035 570 ProSiteProfiles Protein kinase domain profile. 139 462 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi455g00035 570 Pfam Lateral organ boundaries (LOB) domain 401 491 IPR004883 -
Sebi455g00035 570 SUPERFAMILY Protein kinase-like (PK-like) 323 450 IPR011009 -
Sebi455g00035 570 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 326 384 - -
Sebi455g00035 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 325 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi455g00035 Sebi-Chr455 826354 830656 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi455g00035 203 327 EF-hand Containing Proteins AT3G20290 80.000 1.17e-65 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Sebi455g00035 LOB 3.9e-17 No_clan
TF LOB Sebi455g00035 LOB 3.9e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi455g00035 K12483 - gmx:100786047 226.868