Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi455g00018 ATGATATATTTTTATCTATGGCCTAAACATTCTGTAGCAGAAGGAGGAGGAACATTCCCAAAGGTCCTCTCCCCGTCGAAGAACGACAATGTCGTTTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACGGTAGTCCGTGCCCTAAGCAGCACCGGCGGCGCCCGCGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGTTGATTAAAGTGAAAGAGGAGCCGTATGAAGAAGAGAAAGCAAAAACGGTCATCAACGTGGCTCAACCCGGACGGTCTATGCTTTCGTTCGACGATTTTCTTAAGGCTACGAACACAAAAGTCGCATCCGAAGAGGAGTGGCTGAAATCAATGGAAGTAGAACCACCGGTTCAAGCGATGGAAGGAGCTGTCGATGCTGACAGGGTTTGTGCAGAGAATGAAACAGTTGGGGATGAATTGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTTCGCTGAGAAGGAGGCGGTCGAGGTTGAACCGATTGAAGAACCACCGGTTCAAGCGATGGAAGAGGTTGTCGATGTGGACAAGGTTTGTGCTGAGGAAGAGGCGGTCGAGGTTCAACCGGTTGAAGAACCACCGGTTCAAGCGATTGTAGAGGTTGTCGATGTGGACAAGGTTTGTGCGAAGAAAGAAGCGGCTAGGGATGAAGTGAAGGTGGTGAACAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGGTGAGTTTCCTAAAGAACGTGGGTGGTCGTTGTTGGGAAGGAAGGTGGAGGTTGCGATTTCCACTGCCAAAGGAGTGAAGAGATTGGTGGACAATGAGATTATTCATTTCAATTTCCCTCTCCAATATTCCAATTACAAGTTTCAATGGATAGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAACGAATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTCTGATTCTAAGTAATTCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTAGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTACATTATGGTGGGAGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAAAAGTGATGGGGAGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTTGTGCTAGATGAAGCTCATACCATAAAAGCCCAAAGAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGTTTATCAAGCGAAAGAACTCACCGTCTGGCACGTTGTTTATGAAATTCTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGAGAATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATACAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGATGCCCTCTTCGCTAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAACCGCTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTTGCAAGAAGATTCTTCCAGTCGAATACCGAATCATCCGATATATGCGGTCAAAGGGATCCATTACAACTTGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGATGATCCTGTGTTTACACCATGTGCACATAGGTTCTGTAGAGAATGCCTATTCAATTGCTGGGGGACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAAGAGCTCAAGAAAGATGATCTGATTACTTCTCCATCAGAATGCCCGTTCGAGGTTGATACTGAGAGCAATTTGACAGTGTCTTCAAAGGTTTCAAAGCTATTGGATTTCTTGCAACGTATTCAGAAGTCATCTTCTGACGAGAAAAGTATTGTCTTCAGTCAATGGACTTCATTTTTTGATCTGTTGGAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAATGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGTGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGGATCCATGGTGGAATCCTGCAGTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAAAAGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACCGATGATGAGGTTCGGTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 2796 0.4521 MIYFYLWPKHSVAEGGGTFPKVLSPSKNDNVVFVNGKPVLVAQPLTVVRALSSTGGARVLAAPLNPDEFDASKTPLIKVKEEPYEEEKAKTVINVAQPGRSMLSFDDFLKATNTKVASEEEWLKSMEVEPPVQAMEGAVDADRVCAENETVGDELVEESPIQAMEEVFAEKEAVEVEPIEEPPVQAMEEVVDVDKVCAEEEAVEVQPVEEPPVQAIVEVVDVDKVCAKKEAARDEVKVVNKEAVEEKIPNLEDGEFPKERGWSLLGRKVEVAISTAKGVKRLVDNEIIHFNFPLQYSNYKFQWIVRISTKRSGEVGRMPMEWAKTVIPPASFLVSLQYMQRILADAMGLGKTVMTIALILSNSGRERSENSDWESIYDSIITNKRKHVNSSCKVEGSTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGSRTNSAELISGYDVVLTTYGVLSAAYKSDGENSIYHRVQWHRVVLDEAHTIKAQRSQVAQSAFALSSHCRWCLTGTPLQFIKRKNSPSGTLFMKFWEWWSKLVQRPFENGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFARSKVQFDQYVAQGKVLNRYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQLEELNKLASRFFLKSDSASHSIQSRDDPVFTPCAHRFCRECLFNCWGTSMGGKCPICRQELKKDDLITSPSECPFEVDTESNLTVSSKVSKLLDFLQRIQKSSSDEKSIVFSQWTSFFDLLENPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMDPWWNPAVEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTDDEVRSARIKDLKMLFS 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi455g00018 931 Pfam Zinc finger, C3HC4 type (RING finger) 701 738 - -
Sebi455g00018 931 SMART ring_2 666 733 IPR001841 -
Sebi455g00018 931 SMART helicmild6 795 878 IPR001650 -
Sebi455g00018 931 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 703 745 IPR013083 -
Sebi455g00018 931 Pfam Helicase conserved C-terminal domain 766 878 IPR001650 -
Sebi455g00018 931 SUPERFAMILY RING/U-box 702 744 - -
Sebi455g00018 931 CDD DEXDc_SHPRH-like 342 560 - -
Sebi455g00018 931 SMART ultradead3 315 541 IPR014001 -
Sebi455g00018 931 Gene3D - 330 570 IPR038718 -
Sebi455g00018 931 ProSiteProfiles Zinc finger RING-type profile. 705 734 IPR001841 -
Sebi455g00018 931 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 332 526 IPR014001 -
Sebi455g00018 931 CDD SF2_C_SNF 760 889 - -
Sebi455g00018 931 ProSitePatterns Zinc finger RING-type signature. 709 718 IPR017907 -
Sebi455g00018 931 Gene3D - 576 931 IPR027417 -
Sebi455g00018 931 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 767 927 IPR001650 -
Sebi455g00018 931 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 293 930 - -
Sebi455g00018 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 573 922 IPR027417 -
Sebi455g00018 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 337 560 IPR027417 -
Sebi455g00018 931 Pfam SNF2-related domain 341 638 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi455g00018 Sebi-Chr455 339951 347259 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi455g00018 342 930 RAD5 or RAD16-like Gene Family AT5G43530 64.154 0.0 782
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi455g00018 SNF2_N 1.2e-54 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi455g00018 K15505 - gmx:100806677 897.886