Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi455g00013 ATGCCGATGGAATGGGCAAAAACTGTCATTCCACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAACGAATTCTAGCGGATGCAATGGGACTTGGAAAGACGGTTATGACAATTGCTCTGATTCTAAGTAATTCAGGCAGAGAAAGGTCGGAAAACAGCGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGAGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTAGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGCTCACAGGTATTCATAATCTCCAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTACATTATGGTGGGAGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGATGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAAAAGTGATGGGGAGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTTGTGCTAGATGAAGCTCATACCATAAAAGCCCAAAGAAGCCAGGTTGCCCAGTCTGCATTTGCTTTGTCCTCACACTGCCGCTGGTGTCTAACTGGAACGCCGCTTCAGTTTATCAAGCGAAAGAACTCACCGTCTGGCACGTTGTTTATGAAATTCTGGGAATGGTGGAGTAAGTTGGTTCAAAGGCCTTTTGAGAATGGTGATCCAAGAGCTATAAAATTGGTCAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCTTGCCACCAACTGATATTCAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGATGCCCTCTTCGCTAGATCTAAAGTAATGGCTTTGAAGCAGCGGGGTATTAAAGCTAAATATCTTGGAAGCGCTCAGAAGGATTTCACTATTCAGACTAAAGTTGAGCGTGGTCAATTTGACATTTTGTTCATGACTTCTGAGAAGGCATGCACAATTCCTACCAGGGAGGTTATATTGCACGAGTATCCCATCAATTTTTTCCTGTTTCTGTTTATCCTTTTGTGCACGTGTGCATGGGCATGTGTATTCTACCGTGATATAATGACATTTGAGTTGAGTCATGAATCTGATGCTTATGGTGTGGTGTTCTTCTTATTGTATCTTGTTCTTGCGGTTAAGATGATAATGCTTGAGCATGTTCATGATTAA 1230 0.426 MPMEWAKTVIPPASFLVSLQYMQRILADAMGLGKTVMTIALILSNSGRERSENSDWESIYDSIITNKRKHVNSSCKVEGSTLIVCPMALLGQWKLTGIHNLQDELETHSKPGSISIFVHYGGSRTNSAELISGYDVVLTTYGVLSAAYKSDGENSIYHRVQWHRVVLDEAHTIKAQRSQVAQSAFALSSHCRWCLTGTPLQFIKRKNSPSGTLFMKFWEWWSKLVQRPFENGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFARSKVMALKQRGIKAKYLGSAQKDFTIQTKVERGQFDILFMTSEKACTIPTREVILHEYPINFFLFLFILLCTCAWACVFYRDIMTFELSHESDAYGVVFFLLYLVLAVKMIMLEHVHD 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi455g00013 409 CDD DEXDc_SHPRH-like 25 251 - -
Sebi455g00013 409 SMART ultradead3 2 232 IPR014001 -
Sebi455g00013 409 Pfam SNF2-related domain 25 304 IPR000330 GO:0005524|GO:0140658
Sebi455g00013 409 Gene3D - 13 261 IPR038718 -
Sebi455g00013 409 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 25 301 - -
Sebi455g00013 409 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 15 217 IPR014001 -
Sebi455g00013 409 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 251 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi455g00013 Sebi-Chr455 230112 234263 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi455g00013 25 295 RAD5 or RAD16-like Gene Family AT5G43530 60.215 2.40e-106 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi455g00013 SNF2_N 1.9e-47 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi455g00013 K15505 - psat:127103070 387.497