Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi455g00009 ATGGCGGAACATTCTGTAGCAGAAGGAGGAGGAACATTCCGCAAGGTCCTCTCCCCGTCGAACAACGACAATGTTGTCTTCGTAAACGGCAAACCCGTCCTCGTCGCCCAGCCCCTCACAGTGGTCCGTGCCCTAACCAGCACCGGCGGCGCCCGTGTTCTAGCGGCGCCGCTGAACCCCGACGAGTTCGACGCGTCCAAAACGCCGATGATCAAAGTGAAAGAGGAGCCGCTTGAAGAAGAAAAAGGAAAAAGCGGTCTTCAACAACCACCGGTTCAAGCGATGGAAGGAGCTGGTGACGCTGAAAAGGTTTGTGCAGAGATGGAGACGGTTAGGGATGAATCGGTTGAAGAATCACCGATTCAGGCTATGGAAGAGGTTTTCGCTGAGAAGGAGGCGGTCGAGGTTGAACCGATTGAAGAACCACCGGTTCAAGCAATGGAAGAGGTTGTCGATGTGGACAAGGAGGCGGTTGAAGAGAAGATCCCGAACCTTGAGGATGGTGAGTTTCCTAAAGAACGTGGGTGGTCGTTGTTGGGAAGGAAGGTGGAGGTTGCGATTTCCACTGCCAAAGGAGTGAAGAGATTGGTGGACAATGAGATTATTCATTTCAATTTCCCTCTCCAATATTCCAATTACAAGTTTCAATGGATAGTTCGCATCTCAACTAAGCGTTCTGGAGAGGTTGGGAGGATGCCGATGGAATGGGCAAAAACTGTCATTCCACTCATGCAATCTGGAAAAATTAAGATGGTGAGTCTAAGGGATGACTTGTATATTTTTATGTGCAGCTTTTACGTTCACTACTCTATATTCACGGATGTTGTTGATACATCTTGGAGGCTAGAGGCTAGTGGTAACATTAACTCTAGCGTTTATCCACTCCTTTCACTGTTTAATATGCTAGAAATCAAGCCATATCAGAAGGCTGACTTCACCCCGGAGGATATAGATTCTCGAAAGCGGTTGCTTAATCCAAATAAGGGTGGTGAGCCGATTCCAGCACAAAATGATGATGAACAAGCTCTTTCAGAGTCTACTTTGAATAAACTTGTTGGAGCTGCAGAGATCTTTGACCTGGAGGAGAAGCAAGCACCGAGAACCTTGATGTGTACTCTAAAGCCTTATCAGAACCAAGCTCTCTATTGGATGTCAGAAATTGAGAAGGGAATTGATGTCGAATCTGCTGATAGAAACCTGCATCCTTTCTGGTCAGCCTACAATATATGCAATGAGGCACGGTTAAATTTCCAAAAGCAACACAGATGGCAAGGAGGAGGGATTCTAGCGGATGCAATGGGACTTGGAAAGACTGTTATGACAATTGCTCTGATTCTAAGTAATCCAGGCAGAGAAAGGTCGGAAAACAACGATTGGGAGAGTATATATGACAGTATTATCACAAATAAGGGGAAGCATGTTAACTCCTCATGTAAAGTAGAGGGTGGCACTCTAATTGTTTGTCCCATGGCCTTGTTAGGTCAGTGGAAGGATGAGCTTGAAACGCATTCAAAACCAGGCAGTATATCCATATTTGTTCATTATGGTGGGGGCAGAACCAATAGTGCCGAGTTGATCTCCGGGTATGACGTTGTCTTAACAACATACGGTGTCCTATCAGCTGCATACAGAAGTGATGGGGTGAATAGCATCTACCACAGGGTCCAATGGCACAGGGTGGTGCTAGATGAAGCTCATACTATAAAAGCCCATAAAAGCCAGAATTCATTGGAGGACTTATATAGCTTGTATGTTTCCTGCGTGTTGAACCTTGGTGCAACTGGGAATGGGCCTTTTGATTATGGTGATCCAAGAGCTATAAAATTGGTTAAGGGCATTTTGAGGACACTGATGTTAAGAAGAACGAAGGAAACGAAGGATAGATATGGAAGGCCTATACTGGTCCTGCCACCAACTGATATACAAGTGATTGAGTGTGAACAGTCAGAAACAGAACGCGACTTCTATGATGCCCTCTTCGCTAGATCTAAAGTTCAATTTGATCAGTATGTTGCACAAGGAAAGGTTCTTAACCGCTATGCCAATATCCTCGACCTACTAATGCAGTTGAGGCGGTGCTGTAACCATCCATTTTTGGTTATGTGCGGAAGTGATTCCCAGAAATATGCAGACTTGAGCAGACTTGCAAGAAGATTCTTCCAGTCGAATACCGAATCATCCGATATATGCGGTCAAAGGGATCCATTACAACTTGAGGAGTTGAACAAACTAGCTAGTAGATTCTTTCTGAAGTCTGATTCTGCTTCGCACTCTATCCAATCTCGTGGTTACATTGATGAGAGAATGCCTATTCAATTGCTGGGGACCTCAATGGGTGGTAAATGTCCAATCTGTCGTCAAGAGCTCAAGAAAGATGATCTGATTACTTCTCCATCAGAATGCCCGTTCGAGGTTGATACTGAGAGCAATTTGACAGTGTCTTCAAAGAATCCATTGAGGAGTAGAGGAATAGGTTATTTAAGATTTGAAGGGAAATTGTCTCAGAAACAGAGGGAGAAGGTTCTGAAAGAATTTAATGAAACAAGTGAGAAAAGGGTTTTGTTGATGTCACTAAGAGCTGGTGGTGTTGGGTTGAACTTAACTGCAGCTTCTAATGTTTTCCTTATGTTTGAGGAGCAAGCAATAATGAGAATTCATCGTATAGGACAAAAAAGAAGAGTTATTGTTAGGAGATTCATCGTGAAGGACACAGTGGAAGACCGATTGCAACAAGTTCAAGCCAGGAAACAGAGGATGATATCTGGTGCCCTCACGATGATGAGGTTCGGTTCTGCTAGGATTAAAGACCTAAAAATGCTATTCTCATGA 2829 0.4443 MAEHSVAEGGGTFRKVLSPSNNDNVVFVNGKPVLVAQPLTVVRALTSTGGARVLAAPLNPDEFDASKTPMIKVKEEPLEEEKGKSGLQQPPVQAMEGAGDAEKVCAEMETVRDESVEESPIQAMEEVFAEKEAVEVEPIEEPPVQAMEEVVDVDKEAVEEKIPNLEDGEFPKERGWSLLGRKVEVAISTAKGVKRLVDNEIIHFNFPLQYSNYKFQWIVRISTKRSGEVGRMPMEWAKTVIPLMQSGKIKMVSLRDDLYIFMCSFYVHYSIFTDVVDTSWRLEASGNINSSVYPLLSLFNMLEIKPYQKADFTPEDIDSRKRLLNPNKGGEPIPAQNDDEQALSESTLNKLVGAAEIFDLEEKQAPRTLMCTLKPYQNQALYWMSEIEKGIDVESADRNLHPFWSAYNICNEARLNFQKQHRWQGGGILADAMGLGKTVMTIALILSNPGRERSENNDWESIYDSIITNKGKHVNSSCKVEGGTLIVCPMALLGQWKDELETHSKPGSISIFVHYGGGRTNSAELISGYDVVLTTYGVLSAAYRSDGVNSIYHRVQWHRVVLDEAHTIKAHKSQNSLEDLYSLYVSCVLNLGATGNGPFDYGDPRAIKLVKGILRTLMLRRTKETKDRYGRPILVLPPTDIQVIECEQSETERDFYDALFARSKVQFDQYVAQGKVLNRYANILDLLMQLRRCCNHPFLVMCGSDSQKYADLSRLARRFFQSNTESSDICGQRDPLQLEELNKLASRFFLKSDSASHSIQSRGYIDERMPIQLLGTSMGGKCPICRQELKKDDLITSPSECPFEVDTESNLTVSSKNPLRSRGIGYLRFEGKLSQKQREKVLKEFNETSEKRVLLMSLRAGGVGLNLTAASNVFLMFEEQAIMRIHRIGQKRRVIVRRFIVKDTVEDRLQQVQARKQRMISGALTMMRFGSARIKDLKMLFS 942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi455g00009 942 CDD DEXDc_SHPRH-like 373 621 - -
Sebi455g00009 942 SMART helicmild6 813 889 IPR001650 -
Sebi455g00009 942 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 418 613 IPR014001 -
Sebi455g00009 942 Gene3D - 814 942 IPR027417 -
Sebi455g00009 942 Gene3D - 637 746 IPR027417 -
Sebi455g00009 942 Pfam SNF2-related domain 376 577 IPR000330 GO:0005524|GO:0140658
Sebi455g00009 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 634 930 IPR027417 -
Sebi455g00009 942 Gene3D - 348 594 IPR038718 -
Sebi455g00009 942 CDD SF2_C_SNF 819 900 - -
Sebi455g00009 942 Pfam HIRAN domain 187 251 IPR014905 GO:0003676|GO:0008270|GO:0016818
Sebi455g00009 942 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 357 584 IPR027417 -
Sebi455g00009 942 Pfam SNF2-related domain 607 699 IPR000330 GO:0005524|GO:0140658
Sebi455g00009 942 MobiDBLite consensus disorder prediction 320 340 - -
Sebi455g00009 942 Pfam Helicase conserved C-terminal domain 819 889 IPR001650 -
Sebi455g00009 942 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 215 941 - -
Sebi455g00009 942 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 784 935 IPR001650 -
Sebi455g00009 942 SMART ultradead3 369 629 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi455g00009 Sebi-Chr455 167900 173800 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi455g00009 134 941 RAD5 or RAD16-like Gene Family AT5G43530 48.351 0.0 837
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi455g00009 SNF2_N 5e-37 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi455g00009 K15505 - gmx:100806677 1079.32