Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi454g00018 | ATGGGTGACTCCGATGACTATCGCGACCGTGACTCATTCAGCAATTTCGGTCTCTACTCAGACCACAGCGACTTCAACAGGCGAATCATGCTCATGGCCATAGTTTCCCTATCAGTAGTCTTAGTTTTGGTGTTAGCGCTTCACCTCTATGCAAGGTTCATCCTTAAACGCCAAGCTCGCCGTAGAGCCGCAATTCACCAACTTAGCCTCACCGTGGCTCATGCTCACACCCAATTCACCGAACCACCCAACAGAGGACTCGACCCTACCGTCATCGCGGCTCTTCCCACCTTCATCTTCAAAAGAAAGGTACCTCAACAAGAAGAAGAAAATCGCAATCATGGTGATTATTCCTCTAGTGTGATTGAATGTGCGGTGTGCTTGAGTGCTTTAGAAGATGAAGAAACCGTGCGGTTGCTTCCCAATTGCAAGCACACTTTCCACGTTGGTTGCATTGATACGTGGCTCGCTTCGCATTCCACGTGTCCAATTTGTCGAACCAAGGCTGAGCCTCGGCTTGAACCGCACCCACGTGAGGGCCCCACTGGGTTGGGTCTTAATGCTGCACCGTCTGCTCCGGTTTTATTTGAACCACCTGCTGAAGGCACATCAGACGGTGCTAGTGGTACTATTAGTGGGTCACCCAAAATCAATGGTTCAAATTCACGGTTGAGTTCGTTCCGAAGGATGCTTAGTAGAGAGAGATCGTTCAGGAGAATTCAACCTTCTAGCCGTGAAGATATTGATCAAGATTTAGAGAGGCAGTGA | 768 | 0.4922 | MGDSDDYRDRDSFSNFGLYSDHSDFNRRIMLMAIVSLSVVLVLVLALHLYARFILKRQARRRAAIHQLSLTVAHAHTQFTEPPNRGLDPTVIAALPTFIFKRKVPQQEEENRNHGDYSSSVIECAVCLSALEDEETVRLLPNCKHTFHVGCIDTWLASHSTCPICRTKAEPRLEPHPREGPTGLGLNAAPSAPVLFEPPAEGTSDGASGTISGSPKINGSNSRLSSFRRMLSRERSFRRIQPSSREDIDQDLERQ | 255 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi454g00018 | 255 | Pfam | Ring finger domain | 123 | 166 | IPR001841 | - | |
Sebi454g00018 | 255 | FunFam | E3 ubiquitin-protein ligase ATL6 | 75 | 172 | - | - | |
Sebi454g00018 | 255 | ProSiteProfiles | Zinc finger RING-type profile. | 124 | 166 | IPR001841 | - | |
Sebi454g00018 | 255 | MobiDBLite | consensus disorder prediction | 205 | 227 | - | - | |
Sebi454g00018 | 255 | SMART | ring_2 | 124 | 165 | IPR001841 | - | |
Sebi454g00018 | 255 | CDD | RING-H2_EL5-like | 123 | 166 | - | - | |
Sebi454g00018 | 255 | MobiDBLite | consensus disorder prediction | 171 | 255 | - | - | |
Sebi454g00018 | 255 | SUPERFAMILY | RING/U-box | 123 | 172 | - | - | |
Sebi454g00018 | 255 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE | 23 | 208 | - | - | |
Sebi454g00018 | 255 | MobiDBLite | consensus disorder prediction | 228 | 255 | - | - | |
Sebi454g00018 | 255 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 72 | 172 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi454g00018 | Sebi-Chr454 | 423482 | 424249 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi454g00018 | 2 | 255 | C3H Transcription Factor Family | AT2G42360 | 44.358 | 1.97e-58 | 184 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi454g00018 | K19038 | - | gmx:100796057 | 260.381 |