Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi454g00018 ATGGGTGACTCCGATGACTATCGCGACCGTGACTCATTCAGCAATTTCGGTCTCTACTCAGACCACAGCGACTTCAACAGGCGAATCATGCTCATGGCCATAGTTTCCCTATCAGTAGTCTTAGTTTTGGTGTTAGCGCTTCACCTCTATGCAAGGTTCATCCTTAAACGCCAAGCTCGCCGTAGAGCCGCAATTCACCAACTTAGCCTCACCGTGGCTCATGCTCACACCCAATTCACCGAACCACCCAACAGAGGACTCGACCCTACCGTCATCGCGGCTCTTCCCACCTTCATCTTCAAAAGAAAGGTACCTCAACAAGAAGAAGAAAATCGCAATCATGGTGATTATTCCTCTAGTGTGATTGAATGTGCGGTGTGCTTGAGTGCTTTAGAAGATGAAGAAACCGTGCGGTTGCTTCCCAATTGCAAGCACACTTTCCACGTTGGTTGCATTGATACGTGGCTCGCTTCGCATTCCACGTGTCCAATTTGTCGAACCAAGGCTGAGCCTCGGCTTGAACCGCACCCACGTGAGGGCCCCACTGGGTTGGGTCTTAATGCTGCACCGTCTGCTCCGGTTTTATTTGAACCACCTGCTGAAGGCACATCAGACGGTGCTAGTGGTACTATTAGTGGGTCACCCAAAATCAATGGTTCAAATTCACGGTTGAGTTCGTTCCGAAGGATGCTTAGTAGAGAGAGATCGTTCAGGAGAATTCAACCTTCTAGCCGTGAAGATATTGATCAAGATTTAGAGAGGCAGTGA 768 0.4922 MGDSDDYRDRDSFSNFGLYSDHSDFNRRIMLMAIVSLSVVLVLVLALHLYARFILKRQARRRAAIHQLSLTVAHAHTQFTEPPNRGLDPTVIAALPTFIFKRKVPQQEEENRNHGDYSSSVIECAVCLSALEDEETVRLLPNCKHTFHVGCIDTWLASHSTCPICRTKAEPRLEPHPREGPTGLGLNAAPSAPVLFEPPAEGTSDGASGTISGSPKINGSNSRLSSFRRMLSRERSFRRIQPSSREDIDQDLERQ 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi454g00018 255 Pfam Ring finger domain 123 166 IPR001841 -
Sebi454g00018 255 FunFam E3 ubiquitin-protein ligase ATL6 75 172 - -
Sebi454g00018 255 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
Sebi454g00018 255 MobiDBLite consensus disorder prediction 205 227 - -
Sebi454g00018 255 SMART ring_2 124 165 IPR001841 -
Sebi454g00018 255 CDD RING-H2_EL5-like 123 166 - -
Sebi454g00018 255 MobiDBLite consensus disorder prediction 171 255 - -
Sebi454g00018 255 SUPERFAMILY RING/U-box 123 172 - -
Sebi454g00018 255 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 23 208 - -
Sebi454g00018 255 MobiDBLite consensus disorder prediction 228 255 - -
Sebi454g00018 255 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 172 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi454g00018 Sebi-Chr454 423482 424249 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi454g00018 2 255 C3H Transcription Factor Family AT2G42360 44.358 1.97e-58 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi454g00018 K19038 - gmx:100796057 260.381